Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:24604712..24607440-chr6:24620282..24623625,3	K562	blood:
2	chr6:24601929..24604741-chr6:24605284..24606848,2	K562	blood:
3	chr6:24605172..24607164-chr6:24613229..24614959,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10946726	1.00[JPT][hapmap]
rs16889581	1.00[JPT][hapmap]
rs17249952	1.00[JPT][hapmap]
rs2307300	1.00[CHB][hapmap]
rs2493334	1.00[JPT][hapmap]
rs2754771	1.00[JPT][hapmap]
rs2817741	1.00[JPT][hapmap]
rs2817743	1.00[JPT][hapmap]
rs6907640	1.00[JPT][hapmap]
rs6920675	1.00[JPT][hapmap]
rs6934711	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73727344	0.89[ASN][1000 genomes]
rs73727345	1.00[ASN][1000 genomes]
rs7754175	1.00[CHB][hapmap]
rs7763865	1.00[JPT][hapmap]
rs9295629	1.00[JPT][hapmap]
rs9461051	1.00[JPT][hapmap]
rs9467250	1.00[JPT][hapmap]
rs9467261	1.00[JPT][hapmap]
rs9467265	1.00[JPT][hapmap]
rs9467266	1.00[JPT][hapmap]
rs9467267	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24583800-24606600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:24601800-24607600	Weak transcription	Fetal Brain Female	brain
3	chr6:24602000-24606600	Weak transcription	Fetal Intestine Small	intestine

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