Variant report

Variant	rs2817741
Chromosome Location	chr6:24745396-24745397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10946726	1.00[JPT][hapmap]
rs16889581	1.00[JPT][hapmap]
rs17249952	1.00[JPT][hapmap]
rs2493334	1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2754771	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2817742	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2817743	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs6907640	1.00[JPT][hapmap]
rs6920675	1.00[JPT][hapmap]
rs6934711	1.00[JPT][hapmap]
rs7743901	1.00[JPT][hapmap]
rs7763865	1.00[JPT][hapmap]
rs9295629	1.00[JPT][hapmap]
rs9461051	1.00[JPT][hapmap]
rs9467250	1.00[JPT][hapmap]
rs9467261	1.00[JPT][hapmap]
rs9467265	1.00[JPT][hapmap]
rs9467266	1.00[JPT][hapmap]
rs9467267	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24742000-24746800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:24742400-24745400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr6:24743200-24745800	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:24743800-24745600	Enhancers	Primary B cells from cord blood	blood
5	chr6:24744000-24745600	Enhancers	Hela-S3	cervix
6	chr6:24744400-24745600	Enhancers	GM12878-XiMat	blood
7	chr6:24744800-24745600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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