Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:24744199..24747077-chr6:24749466..24750993,2	MCF-7	breast:
2	chr6:24720907..24723025-chr6:24746455..24748463,2	K562	blood:
3	chr6:24743658..24745182-chr6:24745680..24748426,2	K562	blood:
4	chr6:24719346..24721066-chr6:24745378..24747495,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112308	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10946726	1.00[JPT][hapmap]
rs16889581	1.00[JPT][hapmap]
rs17249952	1.00[JPT][hapmap]
rs2493334	1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2754771	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2760158	1.00[TSI][hapmap]
rs2817741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs2817742	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6907640	1.00[JPT][hapmap]
rs6920675	1.00[JPT][hapmap]
rs6934711	1.00[JPT][hapmap]
rs7743901	1.00[JPT][hapmap]
rs7763865	1.00[JPT][hapmap]
rs9295629	1.00[JPT][hapmap]
rs9461051	1.00[JPT][hapmap]
rs9467250	1.00[JPT][hapmap]
rs9467261	1.00[JPT][hapmap]
rs9467265	1.00[JPT][hapmap]
rs9467266	1.00[JPT][hapmap]
rs9467267	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv965630	chr6:24745410-24767271	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2817743	FAM65B	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24745800-24749400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:24746800-24748000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:24746800-24748400	Weak transcription	Monocytes-CD14+_RO01746	blood

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