Variant report
| Variant | rs9467831 |
|---|---|
| Chromosome Location | chr6:26670613-26670614 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1021372 | 0.80[EUR][1000 genomes] |
| rs1021373 | 0.80[EUR][1000 genomes] |
| rs1027204 | 0.81[EUR][1000 genomes] |
| rs2130657 | 0.83[EUR][1000 genomes] |
| rs2451711 | 0.84[EUR][1000 genomes] |
| rs2451712 | 0.84[EUR][1000 genomes] |
| rs2451744 | 0.80[EUR][1000 genomes] |
| rs2451750 | 0.82[EUR][1000 genomes] |
| rs2451751 | 0.82[EUR][1000 genomes] |
| rs2494700 | 0.80[EUR][1000 genomes] |
| rs2494701 | 0.80[EUR][1000 genomes] |
| rs2494709 | 0.81[EUR][1000 genomes] |
| rs2494713 | 0.82[EUR][1000 genomes] |
| rs2494716 | 0.84[EUR][1000 genomes] |
| rs2498351 | 0.83[EUR][1000 genomes] |
| rs2498380 | 0.81[EUR][1000 genomes] |
| rs2504565 | 0.84[EUR][1000 genomes] |
| rs2504566 | 0.83[EUR][1000 genomes] |
| rs2504567 | 0.84[EUR][1000 genomes] |
| rs2504571 | 0.81[EUR][1000 genomes] |
| rs2504592 | 0.81[EUR][1000 genomes] |
| rs2504600 | 0.82[EUR][1000 genomes] |
| rs3001369 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9461288 | 0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9467813 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948921 | chr6:26556890-27443957 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 472 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:9)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9467831 | RP11-457M11.2 | cis | Thyroid | GTEx |
| rs9467831 | RP11-457M11.2 | cis | Artery Tibial | GTEx |
| rs9467831 | ZNF322 | cis | Thyroid | GTEx |
| rs9467831 | ZNF322 | cis | Nerve Tibial | GTEx |
| rs9467831 | HCG11 | Cis_1M | lymphoblastoid | RTeQTL |
| rs9467831 | ZNF322 | cis | Artery Tibial | GTEx |
| rs9467831 | HMGN4 | Cis_1M | lymphoblastoid | RTeQTL |
| rs9467831 | RP11-457M11.2 | cis | Nerve Tibial | GTEx |
| rs9467831 | RP11-457M11.2 | cis | lung | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:26669600-26676600 | Weak transcription | Ovary | ovary |
| 2 | chr6:26670200-26670800 | Bivalent/Poised TSS | Fetal Lung | lung |
| 3 | chr6:26670600-26690000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
