Variant report

Variant rs2498380
Chromosome Location chr6:26643996-26643997
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:26633000-26658000 Weak transcription Fetal Brain Male brain
2 chr6:26636400-26645800 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
3 chr6:26636800-26645800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
4 chr6:26637600-26645800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr6:26638000-26645200 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr6:26638400-26644800 ZNF genes & repeats Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr6:26638400-26646800 ZNF genes & repeats Liver Liver
8 chr6:26638800-26644400 ZNF genes & repeats Primary neutrophils fromperipheralblood blood
9 chr6:26638800-26644800 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr6:26638800-26645400 ZNF genes & repeats Primary B cells from cord blood blood
11 chr6:26638800-26645600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr6:26638800-26646600 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr6:26638800-26646800 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr6:26638800-26646800 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
15 chr6:26639000-26644200 Strong transcription Breast Myoepithelial Primary Cells Breast
16 chr6:26639000-26644200 ZNF genes & repeats NHEK skin
17 chr6:26639000-26644600 Strong transcription Placenta Placenta
18 chr6:26639000-26644600 Strong transcription Placenta Amnion Placenta Amnion
19 chr6:26639000-26644800 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
20 chr6:26639000-26644800 Strong transcription Dnd41 blood
21 chr6:26639000-26645000 ZNF genes & repeats Primary hematopoietic stem cells blood
22 chr6:26639000-26645000 ZNF genes & repeats HMEC breast
23 chr6:26639000-26645200 ZNF genes & repeats Muscle Satellite Cultured Cells --
24 chr6:26639000-26645600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
25 chr6:26639000-26645600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr6:26639000-26645800 ZNF genes & repeats GM12878-XiMat blood
27 chr6:26639000-26646600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
28 chr6:26639000-26651800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr6:26639200-26644800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr6:26639200-26644800 ZNF genes & repeats NHDF-Ad bronchial
31 chr6:26639200-26645600 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr6:26639400-26644600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
33 chr6:26639800-26644400 Strong transcription iPS-18 Cell Line embryonic stem cell
34 chr6:26640000-26645000 Strong transcription Fetal Kidney kidney
35 chr6:26640000-26646200 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr6:26640200-26644000 Strong transcription H1 Cell Line embryonic stem cell
37 chr6:26640200-26644000 Strong transcription Skeletal Muscle Male skeletal muscle
38 chr6:26640200-26644400 Strong transcription Duodenum Smooth Muscle Duodenum
39 chr6:26640200-26644800 Strong transcription Adipose Nuclei Adipose
40 chr6:26640400-26644000 Strong transcription Colon Smooth Muscle Colon
41 chr6:26640400-26645000 Strong transcription K562 blood
42 chr6:26640600-26644200 Strong transcription Brain Angular Gyrus brain
43 chr6:26640800-26644200 Strong transcription Primary T cells from cord blood blood
44 chr6:26641000-26644000 Strong transcription Brain Anterior Caudate brain
45 chr6:26641000-26644600 Strong transcription Skeletal Muscle Female skeletal muscle
46 chr6:26641000-26644800 Strong transcription Primary T killer naive cells fromperipheralblood blood
47 chr6:26641000-26644800 Strong transcription Fetal Muscle Trunk muscle
48 chr6:26641000-26645000 Strong transcription Rectal Mucosa Donor 31 rectum
49 chr6:26641000-26645600 Strong transcription Brain Inferior Temporal Lobe brain
50 chr6:26641200-26644800 Strong transcription Primary T helper naive cells fromperipheralblood blood

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