Variant report

Variant	rs1321481
Chromosome Location	chr6:26538210-26538211
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr6:26537448-26538490	HepG2	liver:	n/a	n/a
2	CHD2	chr6:26537462-26538819	Hela-S3	cervix:	n/a	n/a
3	TCF12	chr6:26538123-26538775	GM12878	blood:	n/a	chr6:26538553-26538563
4	MYC	chr6:26537506-26538689	H1-hESC	embryonic stem cell:	n/a	chr6:26537947-26537958 chr6:26537947-26537957 chr6:26537947-26537956 chr6:26537947-26537958 chr6:26537948-26537957 chr6:26537946-26537959 chr6:26537578-26537587 chr6:26537947-26537957 chr6:26537946-26537961 chr6:26537944-26537959 chr6:26537948-26537958 chr6:26537946-26537959 chr6:26537946-26537959 chr6:26537949-26537958
5	POLR2A	chr6:26538077-26538747	GM12892	blood:	n/a	n/a
6	MYC	chr6:26537138-26538946	Hela-S3	cervix:	n/a	chr6:26537947-26537958 chr6:26537947-26537957 chr6:26537947-26537956 chr6:26537947-26537958 chr6:26537948-26537957 chr6:26537946-26537959 chr6:26537578-26537587 chr6:26537947-26537957 chr6:26537946-26537961 chr6:26537944-26537959 chr6:26537948-26537958 chr6:26537946-26537959 chr6:26537946-26537959 chr6:26537949-26537958
7	NFIC	chr6:26537393-26538763	GM12878	blood:	n/a	n/a
8	SP1	chr6:26537329-26538629	A549	lung:	n/a	chr6:26538132-26538141
9	RELA	chr6:26537472-26538709	GM19099	blood:	n/a	n/a
10	MAX	chr6:26537260-26539012	HCT-116	colon:	n/a	chr6:26537947-26537958 chr6:26537947-26537957 chr6:26537947-26537956 chr6:26537947-26537958 chr6:26537948-26537957 chr6:26537946-26537959 chr6:26537578-26537587 chr6:26537947-26537957 chr6:26537946-26537961 chr6:26537944-26537959 chr6:26537948-26537958 chr6:26537946-26537959 chr6:26537946-26537959 chr6:26537949-26537958
11	FOSL2	chr6:26537457-26538763	MCF-7	breast:	n/a	n/a
12	BRF1	chr6:26537516-26538444	K562	blood:	n/a	n/a
13	POLR2A	chr6:26537338-26538935	GM12892	blood:	n/a	n/a
14	MYC	chr6:26536889-26538900	NB4	blood:	n/a	chr6:26537947-26537958 chr6:26537947-26537957 chr6:26537947-26537956 chr6:26537947-26537958 chr6:26537948-26537957 chr6:26537946-26537959 chr6:26537578-26537587 chr6:26537947-26537957 chr6:26537946-26537961 chr6:26537944-26537959 chr6:26537948-26537958 chr6:26537946-26537959 chr6:26537946-26537959 chr6:26537949-26537958
15	TEAD4	chr6:26537512-26538614	A549	lung:	n/a	n/a
16	NFATC1	chr6:26537154-26538681	GM12878	blood:	n/a	n/a
17	E2F4	chr6:26537423-26539247	K562	blood:	n/a	chr6:26539037-26539046 chr6:26538826-26538836
18	PAX5	chr6:26538110-26538681	GM12878	blood:	n/a	n/a
19	NR2F2	chr6:26537231-26538793	K562	blood:	n/a	n/a
20	RAD21	chr6:26537378-26538511	A549	lung:	n/a	n/a
21	ELF1	chr6:26538084-26538904	K562	blood:	n/a	chr6:26538561-26538570
22	ZC3H11A	chr6:26537479-26538459	K562	blood:	n/a	n/a
23	MBD4	chr6:26537292-26538789	HepG2	liver:	n/a	n/a
24	E2F6	chr6:26537484-26539130	K562	blood:	n/a	chr6:26539037-26539046 chr6:26538694-26538705 chr6:26538826-26538836
25	POLR2A	chr6:26537464-26538769	Hela-S3	cervix:	n/a	n/a
26	MAFK	chr6:26537077-26538384	HepG2	liver:	n/a	chr6:26537253-26537264 chr6:26537826-26537836 chr6:26537251-26537265 chr6:26537248-26537263 chr6:26537253-26537264
27	USF2	chr6:26537671-26538380	Hela-S3	cervix:	n/a	chr6:26537946-26537957
28	SP4	chr6:26537245-26538761	H1-hESC	embryonic stem cell:	n/a	n/a
29	YY1	chr6:26537257-26538804	ECC-1	luminal epithelium:	n/a	chr6:26538016-26538024 chr6:26537532-26537542 chr6:26538013-26538023 chr6:26537532-26537542 chr6:26537532-26537554
30	SP1	chr6:26537379-26538690	A549	lung:	n/a	chr6:26538132-26538141
31	EP300	chr6:26538111-26538536	GM12878	blood:	n/a	n/a
32	ELF1	chr6:26537415-26538907	GM12878	blood:	n/a	chr6:26538561-26538570
33	ZNF263	chr6:26536934-26539705	HEK293-T-REx	kidney:	n/a	chr6:26539121-26539130
34	BCLAF1	chr6:26537011-26538795	K562	blood:	n/a	n/a
35	PML	chr6:26537229-26538830	K562	blood:	n/a	n/a
36	PAX5	chr6:26538133-26538354	GM12878	blood:	n/a	n/a
37	PML	chr6:26538062-26538760	GM12878	blood:	n/a	n/a
38	POLR2A	chr6:26537316-26538979	GM12878	blood:	n/a	n/a
39	MAFK	chr6:26536925-26538460	Hela-S3	cervix:	n/a	chr6:26537253-26537264 chr6:26537826-26537836 chr6:26537251-26537265 chr6:26537248-26537263 chr6:26537253-26537264
40	GATA3	chr6:26537313-26538976	A549	lung:	n/a	n/a
41	GTF3C2	chr6:26537524-26538837	K562	blood:	n/a	n/a
42	POLR2A	chr6:26538183-26538817	HepG2	liver:	n/a	n/a
43	ETS1	chr6:26538018-26538715	GM12878	blood:	n/a	chr6:26538562-26538572 chr6:26538561-26538578 chr6:26538561-26538578 chr6:26538561-26538572
44	IRF4	chr6:26537440-26538593	GM12878	blood:	n/a	n/a
45	MAX	chr6:26537335-26538843	MCF-7	breast:	n/a	chr6:26537947-26537958 chr6:26537947-26537957 chr6:26537947-26537956 chr6:26537947-26537958 chr6:26537948-26537957 chr6:26537946-26537959 chr6:26537578-26537587 chr6:26537947-26537957 chr6:26537946-26537961 chr6:26537944-26537959 chr6:26537948-26537958 chr6:26537946-26537959 chr6:26537946-26537959 chr6:26537949-26537958
46	GATA2	chr6:26537513-26538680	HUVEC	blood vessel:	n/a	n/a
47	USF1	chr6:26537460-26538428	A549	lung:	n/a	n/a
48	POLR3G	chr6:26537614-26538454	K562	blood:	n/a	n/a
49	POU2F2	chr6:26538103-26538769	GM12891	blood:	n/a	chr6:26538548-26538560
50	JUND	chr6:26538123-26538822	A549	lung:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26538188-26538238	HMEC	breast:	n/a
2	chr6:26538194-26538244	HCPEpiC	choroid plexus:	n/a
3	chr6:26538188-26538238	GM12878	blood:	n/a
4	chr6:26538194-26538244	HEK293	kidney:	embryo
5	chr6:26538188-26538238	ProgFib	skin:	n/a
6	chr6:26538188-26538238	Jurkat	blood:	n/a
7	chr6:26538188-26538238	MCF-7	breast:	n/a
8	chr6:26538194-26538244	SAEC	small airway:	n/a
9	chr6:26538188-26538238	HCPEpiC	choroid plexus:	n/a
10	chr6:26538194-26538244	GM12892	blood:	n/a
11	chr6:26538194-26538244	AG04450	lung:	fetal
12	chr6:26538194-26538244	HL-60	blood:	n/a
13	chr6:26538188-26538238	HRCEpiC	kidney:	n/a
14	chr6:26538188-26538238	NHDF-neo	bronchial:	n/a
15	chr6:26538188-26538238	Hepatocyte	liver:	n/a
16	chr6:26538188-26538238	A549	lung:	n/a
17	chr6:26538188-26538238	ovcar-3	ovarian:	n/a
18	chr6:26538188-26538238	AG09319	gingival:	n/a
19	chr6:26538194-26538244	H1-hESC	embryonic stem cell:	embryo
20	chr6:26538188-26538238	Hela-S3	cervix:	n/a
21	chr6:26538188-26538238	HNPCEpiC	eye:	n/a
22	chr6:26538194-26538244	NB4	blood:	n/a
23	chr6:26538188-26538238	GM19239	blood:	n/a
24	chr6:26538188-26538238	T-47D	breast:	n/a
25	chr6:26538194-26538244	RPTEC	kidney:	n/a
26	chr6:26538194-26538244	K562	blood:	n/a
27	chr6:26538188-26538238	GM12892	blood:	n/a
28	chr6:26538194-26538244	NHBE	bronchial:	n/a
29	chr6:26538194-26538244	HRCEpiC	kidney:	n/a
30	chr6:26538194-26538244	HRPEpiC	eye:	n/a
31	chr6:26538194-26538244	AG09309	skin:	n/a
32	chr6:26538188-26538238	SK-N-MC	brain:	n/a
33	chr6:26538194-26538244	PFSK-1	brain:	n/a
34	chr6:26538194-26538244	HMEC	breast:	n/a
35	chr6:26538188-26538238	BJ	skin:	n/a
36	chr6:26538194-26538244	CMK	blood:	n/a
37	chr6:26538188-26538238	BE2_C	brain:	n/a
38	chr6:26538194-26538244	SK-N-SH	brain:	n/a
39	chr6:26538194-26538244	HCT-116	colon:	n/a
40	chr6:26538194-26538244	LNCaP	prostate:	n/a
41	chr6:26538188-26538238	HL-60	blood:	n/a
42	chr6:26538194-26538244	AG09319	gingival:	n/a
43	chr6:26538194-26538244	GM06990	blood:	n/a
44	chr6:26538194-26538244	HIPEpiC	eye:	n/a
45	chr6:26538188-26538238	SKMC	muscle:	n/a
46	chr6:26538194-26538244	BE2_C	brain:	n/a
47	chr6:26538194-26538244	A549	lung:	n/a
48	chr6:26538194-26538244	AG04449	skin:	fetal
49	chr6:26538194-26538244	BJ	skin:	n/a
50	chr6:26538194-26538244	GM12878	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:26217037..26219945-chr6:26536626..26539021,2	K562	blood:
2	chr2:109150427..109151020-chr6:26537930..26538891,2	Hela-S3	cervix:
3	chr6:26537928..26538527-chr6:26569132..26569978,2	K562	blood:
4	chr6:26156308..26158210-chr6:26536750..26538404,2	MCF-7	breast:
5	chr6:26198554..26200175-chr6:26536662..26538943,2	K562	blood:
6	chr6:26536187..26538587-chr6:26584341..26585867,2	K562	blood:
7	chr6:26527195..26529181-chr6:26536100..26538613,2	MCF-7	breast:
8	chr6:26249452..26251500-chr6:26536200..26539102,2	K562	blood:
9	chr6:26537451..26540482-chr6:27099233..27102260,3	K562	blood:
10	chr6:26537892..26540249-chr6:27112385..27115026,2	MCF-7	breast:
11	chr6:26536235..26538263-chr6:27099083..27100611,2	K562	blood:
12	chr2:97534713..97536438-chr6:26537054..26540026,2	MCF-7	breast:
13	chr6:26198322..26200388-chr6:26537916..26540393,2	K562	blood:
14	chr6:26156242..26159105-chr6:26536923..26540101,4	K562	blood:
15	chr6:26381677..26383433-chr6:26537712..26539518,2	K562	blood:
16	chr6:26520627..26522671-chr6:26536742..26539578,4	MCF-7	breast:
17	chr6:26535400..26541597-chr6:26593643..26598951,8	K562	blood:
18	chr6:26223757..26226202-chr6:26537228..26539422,2	MCF-7	breast:
19	chr6:26156242..26159092-chr6:26536120..26538666,4	K562	blood:
20	chr6:26536174..26539515-chr6:26593643..26598624,4	K562	blood:
21	chr6:26530090..26531605-chr6:26535958..26538607,2	MCF-7	breast:
22	chr6:26156110..26158318-chr6:26536983..26539384,2	MCF-7	breast:
23	chr6:26520458..26524632-chr6:26536427..26540091,8	MCF-7	breast:

Variant related genes	Relation type
HMGN4	TF binding region
HMGN4	CpG island
ENSG00000168274	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000261353	Chromatin interaction
ENSG00000196966	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000124508	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000214184	Chromatin interaction
ENSG00000256316	Chromatin interaction
ENSG00000168758	Chromatin interaction
ENSG00000169756	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000146109	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1001687	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1021372	0.92[YRI][hapmap]
rs10214634	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10223789	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10223792	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1027204	0.91[YRI][hapmap]
rs10484442	0.96[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1056347	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1056667	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1056668	0.86[EUR][1000 genomes]
rs1078679	0.96[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10946834	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10946835	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10946837	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11752946	0.89[EUR][1000 genomes]
rs11754138	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11756120	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12526680	0.95[CEU][hapmap];0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12663883	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12663894	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12665431	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1321479	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1321480	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1321482	0.96[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1407045	0.80[CHB][hapmap]
rs1535276	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1535277	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1570059	0.96[CEU][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1570060	0.96[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1570061	0.96[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1884946	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1884947	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1884948	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1884949	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1977201	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2208331	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2224380	0.96[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2255070	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2393669	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2393670	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2451741	0.91[YRI][hapmap]
rs2494692	0.92[YRI][hapmap]
rs2494701	0.91[YRI][hapmap]
rs2498380	0.91[YRI][hapmap]
rs2504565	0.87[YRI][hapmap]
rs2504566	0.88[YRI][hapmap]
rs2504567	0.87[YRI][hapmap]
rs2504571	0.87[YRI][hapmap]
rs2504599	0.96[YRI][hapmap]
rs2504600	0.87[YRI][hapmap]
rs28558133	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35355150	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3736781	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3736782	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3757151	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800303	0.91[YRI][hapmap]
rs4368798	0.87[YRI][hapmap];0.80[AFR][1000 genomes]
rs4573	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[EUR][1000 genomes]
rs4713006	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55930917	0.87[EUR][1000 genomes]
rs6456733	0.96[CEU][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6456734	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6456735	0.91[CEU][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6903973	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6909277	0.88[EUR][1000 genomes]
rs6910899	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6910930	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913398	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913462	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6913877	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6918360	0.96[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6918506	0.96[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6918854	0.96[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6922824	0.96[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6924838	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6924865	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6925703	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6925783	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6925895	0.95[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6926629	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6930120	0.96[CEU][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6932156	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6932350	0.87[EUR][1000 genomes]
rs6932865	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6933176	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6940053	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6940188	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6941022	0.96[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs767471	0.96[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7753565	0.95[CEU][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs7767847	0.88[YRI][hapmap]
rs9295694	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9295695	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9295698	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9357010	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9358952	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9358954	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9379887	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9393728	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393729	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393731	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393732	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9461259	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9461267	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9461270	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9461271	0.96[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9461272	0.96[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9461275	0.80[AFR][1000 genomes]
rs9467773	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9467774	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9467775	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467776	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467778	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467779	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467782	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467783	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467784	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467787	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9467788	0.96[YRI][hapmap]
rs9467791	0.96[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9467796	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9467797	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9467798	0.96[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9467799	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9467800	0.96[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9467802	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9467805	0.81[AFR][1000 genomes]
rs9467810	0.87[YRI][hapmap]
rs9986382	0.96[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1321481	HCG11	Cis_1M	lymphoblastoid	RTeQTL
rs1321481	HCG11	cis	normal skin	skin_eQTL
rs1321481	HMGN4	cis	Whole Blood	GTEx
rs1321481	HCG11	cis	uninvolved skin	skin_eQTL
rs1321481	ZNF322	cis	Nerve Tibial	GTEx
rs1321481	HMGN4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26536400-26539200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:26536400-26540000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:26536400-26540400	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:26536600-26539000	Active TSS	Brain Angular Gyrus	brain
5	chr6:26536600-26539200	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr6:26536600-26539200	Active TSS	Fetal Stomach	stomach
7	chr6:26536600-26539600	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr6:26536800-26539000	Active TSS	Colonic Mucosa	Colon
9	chr6:26536800-26539400	Active TSS	Lung	lung
10	chr6:26536800-26539400	Active TSS	Right Atrium	heart
11	chr6:26536800-26539400	Active TSS	Right Ventricle	heart
12	chr6:26536800-26539600	Active TSS	H9 Cell Line	embryonic stem cell
13	chr6:26536800-26539600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:26536800-26539600	Active TSS	Aorta	Aorta
15	chr6:26536800-26539600	Active TSS	Psoas Muscle	Psoas
16	chr6:26536800-26540000	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr6:26536800-26540000	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr6:26537000-26539000	Active TSS	Brain Cingulate Gyrus	brain
19	chr6:26537000-26539200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:26537000-26539400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:26537000-26539400	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr6:26537000-26539400	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr6:26537000-26539400	Active TSS	Ovary	ovary
24	chr6:26537000-26539400	Active TSS	Small Intestine	intestine
25	chr6:26537000-26539400	Bivalent/Poised TSS	HepG2	liver
26	chr6:26537000-26539600	Active TSS	H1 Cell Line	embryonic stem cell
27	chr6:26537000-26539600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:26537000-26539600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:26537000-26539600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:26537000-26539600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:26537000-26539800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:26537000-26539800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:26537000-26540000	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr6:26537000-26540200	Active TSS	A549	lung
35	chr6:26537200-26539000	Active TSS	Brain Anterior Caudate	brain
36	chr6:26537200-26539000	Active TSS	Fetal Brain Male	brain
37	chr6:26537200-26539000	Active TSS	Fetal Lung	lung
38	chr6:26537200-26539200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr6:26537200-26539200	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr6:26537200-26539200	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr6:26537200-26539200	Active TSS	Gastric	stomach
42	chr6:26537200-26539200	Active TSS	Placenta Amnion	Placenta Amnion
43	chr6:26537200-26539400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:26537200-26539400	Active TSS	Esophagus	oesophagus
45	chr6:26537200-26539400	Active TSS	Fetal Intestine Small	intestine
46	chr6:26537200-26539400	Active TSS	Fetal Muscle Trunk	muscle
47	chr6:26537200-26539400	Active TSS	Left Ventricle	heart
48	chr6:26537200-26539400	Active TSS	Sigmoid Colon	Sigmoid Colon
49	chr6:26537200-26539400	Active TSS	K562	blood
50	chr6:26537200-26539600	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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