Variant report

Variant	rs2393670
Chromosome Location	chr6:26535541-26535542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:26055721..26057266-chr6:26535501..26538062,2	K562	blood:
2	chr6:26533371..26536104-chr6:27090402..27093172,2	K562	blood:
3	chr6:26521097..26522771-chr6:26534272..26536391,2	MCF-7	breast:
4	chr6:26535400..26541597-chr6:26593643..26598951,8	K562	blood:
5	chr6:26199047..26200961-chr6:26534611..26536638,2	K562	blood:

Variant related genes	Relation type
ENSG00000228223	Chromatin interaction
ENSG00000272468	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000187837	Chromatin interaction
ENSG00000197409	Chromatin interaction

Extended variants
information (count: 138 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs1001687	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1021372	0.93[YRI][hapmap]
rs10214634	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10223789	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10223792	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1027204	0.85[GIH][hapmap];0.85[LWK][hapmap];0.93[YRI][hapmap]
rs10484442	0.94[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1056347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1056667	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1056668	0.87[EUR][1000 genomes]
rs1078679	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10946834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10946835	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10946837	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11752946	0.89[EUR][1000 genomes]
rs11754138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11756120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12526680	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12663883	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12663894	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12665431	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1321479	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1321480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1321481	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321482	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.96[LWK][hapmap];0.86[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1535274	0.81[AMR][1000 genomes]
rs1535276	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1535277	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1570059	1.00[CEU][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1570060	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1570061	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.96[LWK][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1884946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1884947	1.00[CEU][hapmap];0.89[GIH][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs1884948	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1884949	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1977201	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2172007	0.85[GIH][hapmap]
rs2208331	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2224380	0.94[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2255070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2393669	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2451741	0.85[GIH][hapmap];0.81[LWK][hapmap];0.93[YRI][hapmap]
rs2494692	0.93[YRI][hapmap]
rs2494701	0.85[GIH][hapmap];0.83[LWK][hapmap];0.93[YRI][hapmap]
rs2498380	0.85[GIH][hapmap];0.85[LWK][hapmap];0.93[YRI][hapmap]
rs2504565	0.84[GIH][hapmap];0.85[LWK][hapmap];0.89[YRI][hapmap]
rs2504566	0.89[YRI][hapmap]
rs2504567	0.85[GIH][hapmap];0.85[LWK][hapmap];0.89[YRI][hapmap]
rs2504571	0.85[GIH][hapmap];0.85[LWK][hapmap];0.89[YRI][hapmap]
rs2504599	0.85[GIH][hapmap];0.85[LWK][hapmap];0.96[YRI][hapmap]
rs2504600	0.85[GIH][hapmap];0.85[LWK][hapmap];0.89[YRI][hapmap]
rs28558133	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35355150	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3736781	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3736782	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3757151	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3800303	0.85[GIH][hapmap];0.87[LWK][hapmap];0.93[YRI][hapmap]
rs4343916	0.81[AMR][1000 genomes]
rs4368798	0.85[GIH][hapmap];0.87[LWK][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs4573	0.96[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes]
rs4713006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713008	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55930917	0.88[EUR][1000 genomes]
rs6456733	0.94[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6456734	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6456735	0.89[ASW][hapmap];0.96[CEU][hapmap];0.81[GIH][hapmap];0.96[LWK][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6903973	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6909277	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6910899	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6910930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913398	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913462	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6913877	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6918360	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6918506	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6918854	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.96[LWK][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6922824	0.88[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6924838	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6924865	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6925047	0.81[AMR][1000 genomes]
rs6925703	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6925783	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6925895	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6926629	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6930120	1.00[CEU][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6932156	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6932350	0.88[EUR][1000 genomes]
rs6932865	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6933176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6940053	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6940188	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6941022	0.94[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs767471	0.94[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7753565	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs7767847	0.88[YRI][hapmap]
rs9295694	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9295695	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9295698	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9357010	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9358952	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9358954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9379887	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9393728	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393729	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9461259	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9461267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9461270	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9461271	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9461272	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9461273	0.83[GIH][hapmap]
rs9461275	0.80[AFR][1000 genomes]
rs9467773	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9467774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9467775	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467776	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467779	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467782	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467783	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467784	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467787	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9467788	0.89[YRI][hapmap]
rs9467791	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9467796	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9467797	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9467798	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9467799	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9467800	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9467802	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9467805	0.81[AFR][1000 genomes]
rs9467810	0.85[GIH][hapmap];0.87[LWK][hapmap];0.89[YRI][hapmap]
rs9986382	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs2393670	HMGN4	Cis_1M	lymphoblastoid	RTeQTL
rs2393670	BTN3A1	cis	cerebellum	SCAN
rs2393670	HMGN4	cis	Whole Blood	GTEx
rs2393670	ZNF204P	cis	cerebellum	SCAN
rs2393670	ZNF322B	trans	lymphoblastoid	seeQTL
rs2393670	ZNF322	cis	Nerve Tibial	GTEx
rs2393670	BTN3A3	cis	parietal	SCAN
rs2393670	BTN3A2	cis	parietal	SCAN
rs2393670	BTN3A2	cis	cerebellum	SCAN
rs2393670	BTN3A3	cis	cerebellum	SCAN
rs2393670	HCG11	Cis_1M	lymphoblastoid	RTeQTL
rs2393670	DCDC2	cis	cerebellum	SCAN
rs2393670	HIST1H2BM	cis	cerebellum	SCAN
rs2393670	BTN3A1	cis	parietal	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26533600-26535800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:26533600-26536800	Weak transcription	Stomach Mucosa	stomach
3	chr6:26533800-26535600	Enhancers	Brain Angular Gyrus	brain
4	chr6:26533800-26535800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:26533800-26535800	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:26533800-26536200	Weak transcription	Placenta	Placenta
7	chr6:26533800-26536400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:26533800-26536400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:26533800-26536600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:26533800-26536800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:26533800-26536800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:26533800-26536800	Weak transcription	Aorta	Aorta
13	chr6:26533800-26536800	Weak transcription	Liver	Liver
14	chr6:26533800-26536800	Weak transcription	Lung	lung
15	chr6:26533800-26536800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:26533800-26536800	Weak transcription	Small Intestine	intestine
17	chr6:26533800-26537000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:26533800-26537000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:26533800-26537000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:26533800-26537000	Weak transcription	Esophagus	oesophagus
21	chr6:26533800-26537000	Weak transcription	Left Ventricle	heart
22	chr6:26533800-26537000	Weak transcription	Ovary	ovary
23	chr6:26533800-26537000	Weak transcription	Pancreas	Pancrea
24	chr6:26533800-26537000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:26534000-26535800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:26534000-26536000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:26534000-26536200	Weak transcription	HUVEC	blood vessel
28	chr6:26534000-26536400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:26534000-26536400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr6:26534000-26536400	Weak transcription	Adipose Nuclei	Adipose
31	chr6:26534000-26536400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr6:26534000-26536400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr6:26534000-26536400	Weak transcription	HSMM	muscle
34	chr6:26534000-26536400	Weak transcription	NHEK	skin
35	chr6:26534000-26536600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:26534000-26536600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:26534000-26536600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr6:26534000-26536600	Weak transcription	Brain Substantia Nigra	brain
39	chr6:26534000-26536600	Enhancers	Fetal Brain Male	brain
40	chr6:26534000-26536600	Enhancers	Fetal Muscle Leg	muscle
41	chr6:26534000-26536600	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr6:26534000-26536600	Weak transcription	NH-A	brain
43	chr6:26534000-26536800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:26534000-26536800	Enhancers	Primary T cells fromperipheralblood	blood
45	chr6:26534000-26536800	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr6:26534000-26536800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:26534000-26536800	Weak transcription	Right Atrium	heart
48	chr6:26534000-26536800	Weak transcription	Right Ventricle	heart
49	chr6:26534000-26536800	Weak transcription	Thymus	Thymus
50	chr6:26534000-26537000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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