Variant report

Variant	rs9986382
Chromosome Location	chr6:26550619-26550620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:26549776..26551317-chr6:26603406..26604964,2	K562	blood:
2	chr6:26541650..26546578-chr6:26547247..26553909,5	MCF-7	breast:
3	chr6:26055330..26058096-chr6:26549540..26551074,2	K562	blood:
4	chr6:26548933..26552351-chr6:26595010..26597972,3	MCF-7	breast:
5	chr6:26526664..26529480-chr6:26549894..26552193,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261353	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000187837	Chromatin interaction

Extended variants
information (count: 139 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs1001687	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1021372	0.93[YRI][hapmap]
rs10214634	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10223789	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10223792	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1027203	0.82[CHB][hapmap]
rs1027204	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[YRI][hapmap]
rs10484442	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1056347	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1056667	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1056668	0.83[EUR][1000 genomes]
rs1078679	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10946834	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10946835	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10946837	0.96[EUR][1000 genomes]
rs11752946	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11754138	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11756120	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12526680	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12663883	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12663894	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665431	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1321479	0.94[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1321480	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1321481	0.96[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1321482	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1490488	0.80[AFR][1000 genomes]
rs1535276	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1535277	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1570059	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1570060	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1570061	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1884946	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1884947	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.87[TSI][hapmap];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1884948	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1884949	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1977201	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2172007	0.82[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap]
rs2208331	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2224380	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2255070	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2393669	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2393670	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2451711	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2451741	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.93[YRI][hapmap]
rs2494692	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs2494701	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.93[YRI][hapmap]
rs2498380	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[YRI][hapmap]
rs2504565	0.84[GIH][hapmap];0.85[JPT][hapmap];0.87[LWK][hapmap];0.89[YRI][hapmap]
rs2504566	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2504567	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.89[YRI][hapmap]
rs2504571	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.89[YRI][hapmap]
rs2504599	0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[YRI][hapmap]
rs2504600	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.89[YRI][hapmap]
rs28558133	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35355150	0.88[EUR][1000 genomes]
rs3736781	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3736782	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3757151	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3800303	0.86[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs4368798	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs4573	0.96[CEU][hapmap];0.91[GIH][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes]
rs4713006	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4713008	0.96[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4871	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55930917	0.92[EUR][1000 genomes]
rs6456733	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6456734	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6456735	0.89[ASW][hapmap];0.96[CEU][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6903973	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6909277	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6910899	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6910930	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6913398	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6913462	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6913877	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6918360	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6918506	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6918854	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6922824	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6924838	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6924865	1.00[ASW][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6925087	0.81[AFR][1000 genomes]
rs6925703	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[TSI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6925783	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6925895	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6926629	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6930120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6932156	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6932350	0.92[EUR][1000 genomes]
rs6932865	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6933176	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6940053	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6940188	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6941022	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs767471	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7753565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs7767847	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs9295694	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9295695	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9295698	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295699	0.84[AMR][1000 genomes]
rs9357010	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9358952	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9358954	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9379887	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9393729	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9393731	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9393732	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9461259	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9461267	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9461270	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9461271	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9461272	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9461273	0.83[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs9461275	0.82[AFR][1000 genomes]
rs9461276	0.81[AFR][1000 genomes]
rs9467773	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9467774	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9467775	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9467776	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9467778	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9467779	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9467782	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9467783	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9467784	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9467787	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9467788	0.89[YRI][hapmap]
rs9467791	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9467796	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9467797	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9467798	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467799	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9467800	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9467802	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9467805	0.83[AFR][1000 genomes]
rs9467810	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs9986382	HCG11	Cis_1M	lymphoblastoid	RTeQTL
rs9986382	HMGN4	Cis_1M	lymphoblastoid	RTeQTL
rs9986382	ZNF204P	cis	cerebellum	SCAN
rs9986382	ZNF322	cis	Nerve Tibial	GTEx
rs9986382	BTN3A3	cis	cerebellum	SCAN
rs9986382	ZNF322B	trans	lymphoblastoid	seeQTL
rs9986382	BTN3A2	cis	lymphoblastoid	seeQTL
rs9986382	HCG11	cis	normal skin	skin_eQTL
rs9986382	HCG11	cis	uninvolved skin	skin_eQTL
rs9986382	BTN3A2	cis	cerebellum	SCAN
rs9986382	BTN3A2	cis	parietal	SCAN
rs9986382	DCDC2	cis	cerebellum	SCAN
rs9986382	BTN3A3	cis	parietal	SCAN
rs9986382	HMGN4	cis	Whole Blood	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26539600-26553000	Weak transcription	Fetal Heart	heart
2	chr6:26539800-26550800	Weak transcription	Pancreas	Pancrea
3	chr6:26540000-26550800	Weak transcription	Lung	lung
4	chr6:26545800-26550800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:26546200-26550800	Weak transcription	Gastric	stomach
6	chr6:26546400-26550800	Weak transcription	Spleen	Spleen
7	chr6:26546600-26550800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:26547000-26550800	Weak transcription	K562	blood
9	chr6:26549600-26551800	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr6:26549800-26551400	Active TSS	H9 Cell Line	embryonic stem cell
11	chr6:26550000-26550800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:26550000-26551200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:26550000-26551200	Enhancers	Stomach Mucosa	stomach
14	chr6:26550000-26551400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:26550000-26551400	Active TSS	Fetal Kidney	kidney
16	chr6:26550000-26551400	Flanking Active TSS	Dnd41	blood
17	chr6:26550000-26551600	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr6:26550000-26551800	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr6:26550000-26552000	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr6:26550200-26550800	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr6:26550200-26550800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:26550200-26551200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:26550200-26551200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:26550200-26551200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:26550200-26551200	Active TSS	Brain Anterior Caudate	brain
26	chr6:26550200-26551200	Flanking Active TSS	Fetal Muscle Trunk	muscle
27	chr6:26550200-26551200	Active TSS	HSMMtube	muscle
28	chr6:26550200-26551400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:26550200-26551400	Active TSS	Primary T cells from cord blood	blood
30	chr6:26550200-26551400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:26550200-26551400	Active TSS	Fetal Brain Female	brain
32	chr6:26550200-26551400	Active TSS	Thymus	Thymus
33	chr6:26550200-26551600	Active TSS	H1 Cell Line	embryonic stem cell
34	chr6:26550200-26551600	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr6:26550200-26552000	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr6:26550400-26550800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr6:26550400-26550800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:26550400-26550800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:26550400-26550800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr6:26550400-26550800	Active TSS	Brain Hippocampus Middle	brain
41	chr6:26550400-26550800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr6:26550400-26550800	Active TSS	Right Atrium	heart
43	chr6:26550400-26550800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr6:26550400-26550800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr6:26550400-26550800	Active TSS	HMEC	breast
46	chr6:26550400-26550800	Flanking Active TSS	HUVEC	blood vessel
47	chr6:26550400-26550800	Flanking Active TSS	Osteobl	bone
48	chr6:26550400-26551000	Flanking Active TSS	GM12878-XiMat	blood
49	chr6:26550400-26551200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr6:26550400-26551200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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