Variant report

Variant	rs6925895
Chromosome Location	chr6:26572165-26572166
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:33)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:33 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26505484..26507456-chr6:26570527..26573483,2	K562	blood:
2	chr6:26320916..26324695-chr6:26568559..26572226,5	K562	blood:
3	chr6:26571513..26576040-chr6:26594296..26598668,8	MCF-7	breast:
4	chr6:26156493..26160609-chr6:26566713..26572551,10	K562	blood:
5	chr6:26571842..26573812-chr6:27115017..27116978,2	K562	blood:
6	chr6:26217011..26219959-chr6:26570720..26572283,2	K562	blood:
7	chr6:26532740..26539448-chr6:26569667..26573975,11	K562	blood:
8	chr6:26571551..26574960-chr6:26589936..26592999,3	MCF-7	breast:
9	chr6:26519454..26523332-chr6:26568814..26573401,9	K562	blood:
10	chr6:26328751..26331113-chr6:26570899..26573999,3	K562	blood:
11	chr6:26571775..26574156-chr6:27139897..27141601,2	MCF-7	breast:
12	chr6:26570796..26573059-chr6:27099737..27102153,2	MCF-7	breast:
13	chr6:26569051..26574263-chr6:27058255..27061104,5	K562	blood:
14	chr6:26566413..26579648-chr6:26592370..26599609,38	K562	blood:
15	chr6:26318750..26323113-chr6:26568559..26574896,7	K562	blood:
16	chr6:26198264..26200984-chr6:26569161..26573441,3	K562	blood:
17	chr6:26536057..26540079-chr6:26569592..26573592,5	K562	blood:
18	chr6:26569658..26573509-chr6:27099375..27102190,3	K562	blood:
19	chr6:26571063..26574475-chr6:27099949..27102316,3	K562	blood:
20	chr6:26570341..26572398-chr6:26986666..26989139,2	K562	blood:
21	chr6:26197063..26201170-chr6:26570047..26573982,4	K562	blood:
22	chr6:26519760..26523332-chr6:26568841..26572559,5	K562	blood:
23	chr6:26329307..26333799-chr6:26568024..26573999,9	K562	blood:
24	chr6:26340224..26344158-chr6:26569567..26573981,6	K562	blood:
25	chr6:26174601..26176102-chr6:26570982..26573796,2	K562	blood:
26	chr6:26204076..26206640-chr6:26570365..26573810,4	K562	blood:
27	chr6:26248134..26251436-chr6:26571961..26574933,3	K562	blood:
28	chr1:110882025..110882535-chr6:26572043..26572658,2	Hela-S3	cervix:
29	chr6:26156671..26160280-chr6:26569301..26572551,5	K562	blood:
30	chr6:26568882..26571175-chr6:26571456..26572979,2	K562	blood:
31	chr6:26570453..26572471-chr6:26595621..26597254,2	MCF-7	breast:
32	chr6:26340127..26342724-chr6:26570668..26572890,2	MCF-7	breast:
33	chr6:26568033..26580216-chr6:26588796..26603066,49	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196866	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000256316	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000224843	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000238621	Chromatin interaction
ENSG00000220875	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000198518	Chromatin interaction

Extended variants
information (count: 140 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs1001687	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1021372	0.96[YRI][hapmap]
rs10214634	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10223789	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10223792	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1027203	0.82[CHB][hapmap]
rs1027204	0.86[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[YRI][hapmap]
rs10484442	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1056347	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1056667	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1056668	0.81[EUR][1000 genomes]
rs1078679	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10946834	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10946835	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10946837	0.94[EUR][1000 genomes]
rs11752946	0.93[EUR][1000 genomes]
rs11754138	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11756120	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12526680	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12663883	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12663894	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665431	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1321479	0.94[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1321480	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1321481	0.95[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1321482	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1490488	0.80[AFR][1000 genomes]
rs1535276	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1535277	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1570059	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1570060	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1570061	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1884946	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1884947	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes]
rs1884948	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1884949	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1977201	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2172007	0.82[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap]
rs2208331	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2224380	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2255070	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2393669	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2393670	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2451711	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2451741	0.86[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.96[YRI][hapmap]
rs2494692	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs2494701	0.86[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[YRI][hapmap]
rs2498380	0.86[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[YRI][hapmap]
rs2504565	0.87[GIH][hapmap];0.85[JPT][hapmap];0.87[LWK][hapmap];0.93[YRI][hapmap]
rs2504566	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs2504567	0.86[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[YRI][hapmap]
rs2504571	0.86[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[YRI][hapmap]
rs2504599	0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap]
rs2504600	0.86[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[YRI][hapmap]
rs28558133	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35355150	0.86[EUR][1000 genomes]
rs3736781	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3736782	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3757151	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3800303	0.86[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4368798	0.86[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.80[MKK][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4573	0.96[CEU][hapmap];0.91[GIH][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs4713006	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4713008	0.96[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4871	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs55930917	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6456733	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6456734	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6456735	0.88[ASW][hapmap];0.95[CEU][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6903973	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6909277	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6910899	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6910930	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6913398	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6913462	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6913877	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6918360	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6918506	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6918854	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6922824	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6924838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924865	1.00[ASW][hapmap];0.96[GIH][hapmap];0.98[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6925087	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6925703	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.87[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6925783	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6926629	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6930120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6932156	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6932350	0.93[EUR][1000 genomes]
rs6932865	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6933176	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6940053	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6940188	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6941022	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs767471	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7753565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs7767847	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs9295694	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9295695	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9295698	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9295699	0.87[AMR][1000 genomes]
rs9357010	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9358952	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9358954	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9379887	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9393729	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9393731	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9393732	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9461259	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9461267	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9461270	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9461271	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9461272	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461273	0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs9461275	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9461276	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9467773	0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9467774	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9467775	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9467776	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9467778	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9467779	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9467782	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9467783	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9467784	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9467787	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9467788	0.86[YRI][hapmap]
rs9467791	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.93[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9467796	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9467797	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9467798	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9467799	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9467800	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9467802	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9467805	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9467810	0.86[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9986382	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs6925895	BTN3A3	cis	cerebellum	SCAN
rs6925895	DCDC2	cis	cerebellum	SCAN
rs6925895	HMGN4	cis	Whole Blood	GTEx
rs6925895	HMGN4	Cis_1M	lymphoblastoid	RTeQTL
rs6925895	BTN3A2	cis	lymphoblastoid	seeQTL
rs6925895	ZNF322	cis	Nerve Tibial	GTEx
rs6925895	BTN3A2	cis	parietal	SCAN
rs6925895	ZNF322B	trans	lymphoblastoid	seeQTL
rs6925895	BTN3A2	cis	cerebellum	SCAN
rs6925895	BTN3A3	cis	parietal	SCAN
rs6925895	HCG11	Cis_1M	lymphoblastoid	RTeQTL
rs6925895	ZNF204P	cis	cerebellum	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26569600-26572200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:26569600-26572200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:26569600-26572200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:26569600-26572200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:26569600-26572200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:26569600-26572200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:26569600-26572200	Weak transcription	Aorta	Aorta
8	chr6:26569600-26572200	Weak transcription	Brain Germinal Matrix	brain
9	chr6:26569600-26572200	Weak transcription	Colonic Mucosa	Colon
10	chr6:26569600-26572200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:26569600-26572200	Weak transcription	Fetal Lung	lung
12	chr6:26569600-26572200	Weak transcription	Pancreas	Pancrea
13	chr6:26569600-26572200	Weak transcription	HSMMtube	muscle
14	chr6:26569600-26572400	Weak transcription	Small Intestine	intestine
15	chr6:26569600-26577600	Weak transcription	Spleen	Spleen
16	chr6:26569800-26572200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:26569800-26572200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:26569800-26572200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:26569800-26572200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:26569800-26572200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:26569800-26572200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:26569800-26572200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:26569800-26572200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:26569800-26572200	Weak transcription	Liver	Liver
25	chr6:26569800-26572200	Weak transcription	Brain Angular Gyrus	brain
26	chr6:26569800-26572200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:26569800-26572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:26569800-26572200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr6:26569800-26572200	Weak transcription	Psoas Muscle	Psoas
30	chr6:26569800-26572200	Weak transcription	Right Atrium	heart
31	chr6:26569800-26572200	Weak transcription	Stomach Mucosa	stomach
32	chr6:26569800-26572200	Weak transcription	HMEC	breast
33	chr6:26569800-26572200	Weak transcription	NH-A	brain
34	chr6:26570000-26572200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr6:26570000-26572200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr6:26570000-26572200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:26570000-26572200	Weak transcription	HUVEC	blood vessel
38	chr6:26570000-26572200	Weak transcription	NHEK	skin
39	chr6:26570000-26572200	Weak transcription	NHLF	lung
40	chr6:26570200-26572200	Weak transcription	Dnd41	blood
41	chr6:26570400-26572200	Weak transcription	Left Ventricle	heart
42	chr6:26570400-26573000	Active TSS	K562	blood
43	chr6:26570600-26572200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:26571600-26572200	Enhancers	Fetal Brain Male	brain
45	chr6:26571600-26573400	Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr6:26571800-26572200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
47	chr6:26571800-26572200	Enhancers	Primary B cells from peripheral blood	blood
48	chr6:26571800-26572200	Enhancers	Fetal Heart	heart
49	chr6:26571800-26572200	Flanking Active TSS	GM12878-XiMat	blood
50	chr6:26571800-26572200	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links