Variant report

Variant rs1001687
Chromosome Location chr6:26573218-26573219
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:26569600-26577600 Weak transcription Spleen Spleen
2 chr6:26571600-26573400 Active TSS iPS-15b Cell Line embryonic stem cell
3 chr6:26571800-26573400 Active TSS H9 Cell Line embryonic stem cell
4 chr6:26571800-26573400 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
5 chr6:26571800-26573400 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
6 chr6:26571800-26573400 Active TSS A549 lung
7 chr6:26571800-26573600 Active TSS ES-I3 Cell Line embryonic stem cell
8 chr6:26571800-26573600 Active TSS HUES6 Cell Line embryonic stem cell
9 chr6:26571800-26573600 Active TSS HUES64 Cell Line embryonic stem cell
10 chr6:26571800-26573600 Active TSS iPS-18 Cell Line embryonic stem cell
11 chr6:26571800-26573600 Active TSS iPS-20b Cell Line embryonic stem cell
12 chr6:26572000-26573400 Active TSS H1 Cell Line embryonic stem cell
13 chr6:26572000-26573400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr6:26572000-26573400 Active TSS HUES48 Cell Line embryonic stem cell
15 chr6:26572000-26573400 Active TSS Rectal Smooth Muscle rectum
16 chr6:26572200-26573400 Active TSS Brain Angular Gyrus brain
17 chr6:26572200-26573400 Enhancers Dnd41 blood
18 chr6:26572200-26573400 Active TSS NHEK skin
19 chr6:26572400-26573400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr6:26572600-26573400 Active TSS Rectal Mucosa Donor 29 rectum
21 chr6:26573000-26573400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
22 chr6:26573000-26573400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr6:26573000-26573400 Enhancers Primary monocytes fromperipheralblood blood
24 chr6:26573000-26573400 Enhancers Primary T cells fromperipheralblood blood
25 chr6:26573000-26573400 Enhancers Primary hematopoietic stem cells short term culture blood
26 chr6:26573000-26573400 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr6:26573000-26573400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
28 chr6:26573000-26573400 Enhancers Primary T helper 17 cells PMA-I stimulated --
29 chr6:26573000-26573400 Enhancers Primary Natural Killer cells fromperipheralblood blood
30 chr6:26573000-26573400 Flanking Active TSS Brain Anterior Caudate brain
31 chr6:26573000-26573400 Active TSS Stomach Smooth Muscle stomach
32 chr6:26573000-26573400 Flanking Active TSS HepG2 liver
33 chr6:26573000-26573400 Enhancers HMEC breast
34 chr6:26573000-26573400 Enhancers HUVEC blood vessel
35 chr6:26573000-26573600 Flanking Active TSS GM12878-XiMat blood
36 chr6:26573000-26573600 Flanking Active TSS K562 blood
37 chr6:26573000-26576600 Weak transcription NHLF lung
38 chr6:26573000-26576800 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr6:26573000-26576800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr6:26573000-26577000 Weak transcription Brain Substantia Nigra brain
41 chr6:26573000-26577200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr6:26573000-26577600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
43 chr6:26573200-26573400 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells blood
44 chr6:26573200-26573400 Enhancers Primary T helper cells PMA-I stimulated --
45 chr6:26573200-26573400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr6:26573200-26573400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
47 chr6:26573200-26573400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
48 chr6:26573200-26573400 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
49 chr6:26573200-26573400 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
50 chr6:26573200-26573400 Enhancers Duodenum Mucosa Duodenum

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