Variant report

Variant	rs1535276
Chromosome Location	chr6:26520941-26520942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr6:26520733-26521077	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr6:26520578-26521483	HL-60	blood:	n/a	n/a
3	ZBTB7A	chr6:26520925-26521057	K562	blood:	n/a	n/a
4	USF1	chr6:26520535-26521004	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr6:26520792-26521400	NB4	blood:	n/a	n/a
6	CHD2	chr6:26520852-26521620	Hela-S3	cervix:	n/a	n/a
7	RUNX3	chr6:26520604-26521006	GM12878	blood:	n/a	n/a
8	POLR2A	chr6:26520703-26521581	K562	blood:	n/a	n/a
9	SIN3AK20	chr6:26520707-26521045	HepG2	liver:	n/a	n/a
10	POLR2A	chr6:26520748-26521566	K562	blood:	n/a	n/a
11	ELF1	chr6:26520683-26521298	GM12878	blood:	n/a	n/a
12	POLR2A	chr6:26520658-26521100	GM12892	blood:	n/a	n/a
13	POLR2A	chr6:26520858-26521557	GM12892	blood:	n/a	n/a
14	CHD2	chr6:26520781-26520975	K562	blood:	n/a	n/a
15	MAX	chr6:26520634-26521030	H1-hESC	embryonic stem cell:	n/a	chr6:26520811-26520818 chr6:26520809-26520818 chr6:26520810-26520820 chr6:26520809-26520819 chr6:26520810-26520819 chr6:26520810-26520819 chr6:26520808-26520821 chr6:26520808-26520823 chr6:26520809-26520820
16	MAX	chr6:26520543-26521095	SK-N-SH	brain:	n/a	chr6:26520811-26520818 chr6:26520809-26520818 chr6:26520810-26520820 chr6:26520809-26520819 chr6:26520810-26520819 chr6:26520810-26520819 chr6:26520808-26520821 chr6:26520808-26520823 chr6:26520809-26520820
17	POLR2A	chr6:26520684-26521058	PANC-1	pancreas:	n/a	n/a
18	MAX	chr6:26520505-26521041	MCF-7	breast:	n/a	chr6:26520811-26520818 chr6:26520809-26520818 chr6:26520810-26520820 chr6:26520809-26520819 chr6:26520810-26520819 chr6:26520810-26520819 chr6:26520808-26520821 chr6:26520808-26520823 chr6:26520809-26520820
19	EGR1	chr6:26520448-26521604	K562	blood:	n/a	chr6:26521323-26521336 chr6:26521328-26521343 chr6:26521329-26521342 chr6:26521322-26521337 chr6:26521047-26521061 chr6:26521350-26521363 chr6:26521083-26521097 chr6:26521332-26521341 chr6:26521327-26521337 chr6:26521063-26521077
20	USF2	chr6:26520674-26520973	K562	blood:	n/a	n/a
21	YY1	chr6:26520642-26521046	K562	blood:	n/a	n/a
22	POLR2A	chr6:26520766-26521041	Hela-S3	cervix:	n/a	n/a
23	CEBPD	chr6:26520719-26521647	K562	blood:	n/a	n/a
24	POLR2A	chr6:26520815-26521559	MCF-7	breast:	n/a	n/a
25	MXI1	chr6:26520639-26521037	GM12878	blood:	n/a	chr6:26520809-26520818
26	FOSL2	chr6:26520718-26521810	SK-N-SH	brain:	n/a	chr6:26521014-26521024 chr6:26521354-26521363
27	MAX	chr6:26520313-26521740	HepG2	liver:	n/a	chr6:26520811-26520818 chr6:26520809-26520818 chr6:26520810-26520820 chr6:26520809-26520819 chr6:26520810-26520819 chr6:26520810-26520819 chr6:26520808-26520821 chr6:26520808-26520823 chr6:26521328-26521338 chr6:26520809-26520820
28	POLR2A	chr6:26520247-26521311	HepG2	liver:	n/a	n/a
29	MXI1	chr6:26520387-26522051	SK-N-SH	brain:	n/a	chr6:26520809-26520818
30	ZC3H11A	chr6:26520542-26521008	K562	blood:	n/a	n/a
31	POLR2A	chr6:26520570-26521064	K562	blood:	n/a	n/a
32	MTA3	chr6:26520278-26521040	GM12878	blood:	n/a	n/a
33	SIN3AK20	chr6:26520626-26521059	K562	blood:	n/a	n/a
34	POLR2A	chr6:26520394-26521034	PANC-1	pancreas:	n/a	n/a
35	MAX	chr6:26520515-26521763	HCT-116	colon:	n/a	chr6:26520811-26520818 chr6:26520809-26520818 chr6:26520810-26520820 chr6:26520809-26520819 chr6:26520810-26520819 chr6:26520810-26520819 chr6:26520808-26520821 chr6:26520808-26520823 chr6:26521328-26521338 chr6:26520809-26520820
36	MAX	chr6:26520488-26521037	A549	lung:	n/a	chr6:26520811-26520818 chr6:26520809-26520818 chr6:26520810-26520820 chr6:26520809-26520819 chr6:26520810-26520819 chr6:26520810-26520819 chr6:26520808-26520821 chr6:26520808-26520823 chr6:26520809-26520820
37	POLR2A	chr6:26520639-26521060	K562	blood:	n/a	n/a
38	MAX	chr6:26520363-26522824	A549	lung:	n/a	chr6:26520811-26520818 chr6:26520809-26520818 chr6:26520810-26520820 chr6:26520809-26520819 chr6:26520810-26520819 chr6:26520810-26520819 chr6:26520808-26520821 chr6:26520808-26520823 chr6:26521328-26521338 chr6:26520809-26520820
39	PML	chr6:26520480-26521311	K562	blood:	n/a	n/a
40	USF1	chr6:26520693-26521022	A549	lung:	n/a	n/a
41	YY1	chr6:26520647-26521023	HepG2	liver:	n/a	n/a
42	USF1	chr6:26520649-26521009	SK-N-SH_RA	brain:	n/a	n/a
43	EP300	chr6:26520758-26521001	K562	blood:	n/a	n/a
44	POLR2A	chr6:26520808-26521047	GM12891	blood:	n/a	n/a
45	POLR2A	chr6:26520858-26521560	GM18951	blood:	n/a	n/a
46	MYC	chr6:26520482-26521057	K562	blood:	n/a	chr6:26520811-26520818 chr6:26520809-26520818 chr6:26520810-26520820 chr6:26520809-26520819 chr6:26520810-26520819 chr6:26520810-26520819 chr6:26520808-26520821 chr6:26520808-26520823 chr6:26520809-26520820
47	TAF1	chr6:26520694-26521073	PFSK-1	brain:	n/a	n/a
48	NRF1	chr6:26520860-26521329	K562	blood:	n/a	n/a
49	ELF1	chr6:26520624-26521067	HepG2	liver:	n/a	n/a
50	MTA3	chr6:26520571-26521086	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:26297237..26299588-chr6:26519952..26522018,2	K562	blood:
2	chr17:8339183..8340052-chr6:26520850..26521728,2	Hela-S3	cervix:
3	chr6:26383299..26384986-chr6:26520070..26522600,2	K562	blood:
4	chr6:26420252..26422779-chr6:26519711..26522673,2	K562	blood:
5	chr6:26198124..26199998-chr6:26520705..26522799,2	K562	blood:
6	chr6:26229652..26232354-chr6:26520028..26522000,2	K562	blood:
7	chr6:26157128..26159753-chr6:26519202..26521718,3	K562	blood:
8	chr6:26520764..26524239-chr6:26594606..26597481,4	K562	blood:
9	chr6:26234528..26236146-chr6:26520612..26523386,2	K562	blood:
10	chr6:26195075..26199998-chr6:26518402..26523264,7	K562	blood:
11	chr6:26518768..26523261-chr6:26527138..26531427,8	MCF-7	breast:
12	chr6:26319791..26322184-chr6:26520367..26521947,2	K562	blood:
13	chr6:26187831..26190328-chr6:26520761..26523308,3	K562	blood:
14	chr6:26122811..26125684-chr6:26519933..26522732,4	K562	blood:
15	chr6:26341603..26342500-chr6:26520725..26521500,3	K562	blood:
16	chr6:26352176..26356420-chr6:26519489..26524545,4	K562	blood:
17	chr6:26520627..26522671-chr6:26536742..26539578,4	MCF-7	breast:
18	chr6:26248591..26251636-chr6:26519454..26522320,3	K562	blood:
19	chr6:26520458..26524632-chr6:26536427..26540091,8	MCF-7	breast:
20	chr6:26352931..26356420-chr6:26520848..26524138,3	K562	blood:
21	chr6:26519250..26523737-chr6:27099178..27105777,8	K562	blood:
22	chr6:26457960..26461047-chr6:26519488..26522400,3	MCF-7	breast:
23	chr6:26420245..26422646-chr6:26519763..26522632,2	K562	blood:
24	chr6:26399787..26402548-chr6:26520304..26522588,2	K562	blood:
25	chr6:26215412..26219085-chr6:26518224..26524021,6	K562	blood:
26	chr6:26122246..26124996-chr6:26519353..26522732,3	K562	blood:
27	chr5:44809278..44810132-chr6:26520519..26521156,2	Hela-S3	cervix:
28	chr6:26187760..26190799-chr6:26518890..26523308,5	K562	blood:
29	chr6:26364672..26366648-chr6:26519902..26522691,2	K562	blood:
30	chr6:26360935..26366570-chr6:26520779..26523276,5	K562	blood:
31	chr6:26284286..26286997-chr6:26519588..26522057,2	K562	blood:
32	chr6:26520371..26522004-chr6:27113193..27114715,2	K562	blood:
33	chr6:26283829..26285786-chr6:26519588..26522507,3	K562	blood:
34	chr6:26440218..26442900-chr6:26520172..26522018,2	K562	blood:

Variant related genes	Relation type
HCG11	TF binding region
RNU6-502P	TF binding region
ENSG00000180573	Chromatin interaction
ENSG00000112996	Chromatin interaction
ENSG00000124549	Chromatin interaction
ENSG00000112763	Chromatin interaction
ENSG00000111801	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000186470	Chromatin interaction
ENSG00000252399	Chromatin interaction
ENSG00000166579	Chromatin interaction
ENSG00000158406	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000261353	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000124575	Chromatin interaction
ENSG00000124508	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000215979	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000026950	Chromatin interaction
ENSG00000256316	Chromatin interaction
ENSG00000188987	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000216331	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs1001687	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1021372	0.89[YRI][hapmap]
rs10214634	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10223789	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10223792	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1027204	0.85[GIH][hapmap];0.85[LWK][hapmap];0.89[YRI][hapmap]
rs10484442	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1056347	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1056667	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1056668	0.93[EUR][1000 genomes]
rs1078679	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10946834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946835	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946837	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11752946	0.83[EUR][1000 genomes]
rs11754138	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756120	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526680	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12663883	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12663894	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12665431	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1321479	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1321480	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321481	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1321482	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.96[LWK][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1535274	0.81[AMR][1000 genomes]
rs1535277	0.85[AFR][1000 genomes]
rs1570059	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1570060	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1570061	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.96[LWK][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1884946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1884947	1.00[CEU][hapmap];0.89[GIH][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs1884948	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1884949	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1977201	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2024970	0.83[EUR][1000 genomes]
rs2172007	0.85[GIH][hapmap]
rs2208331	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2224380	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2255070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2393669	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2393670	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2451741	0.85[GIH][hapmap];0.81[LWK][hapmap];0.89[YRI][hapmap]
rs2494692	0.89[YRI][hapmap]
rs2494701	0.85[GIH][hapmap];0.83[LWK][hapmap];0.89[YRI][hapmap]
rs2498380	0.85[GIH][hapmap];0.85[LWK][hapmap];0.89[YRI][hapmap]
rs2504565	0.84[GIH][hapmap];0.85[LWK][hapmap];0.93[YRI][hapmap]
rs2504566	0.93[YRI][hapmap]
rs2504567	0.85[GIH][hapmap];0.85[LWK][hapmap];0.93[YRI][hapmap]
rs2504571	0.85[GIH][hapmap];0.85[LWK][hapmap];0.93[YRI][hapmap]
rs2504599	0.85[GIH][hapmap];0.85[LWK][hapmap];0.93[YRI][hapmap]
rs2504600	0.85[GIH][hapmap];0.85[LWK][hapmap];0.93[YRI][hapmap]
rs28558133	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35355150	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3736781	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3736782	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3757151	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3800303	0.85[GIH][hapmap];0.87[LWK][hapmap];0.89[YRI][hapmap]
rs4343916	0.81[AMR][1000 genomes]
rs4368798	0.85[GIH][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs4573	0.96[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs4713006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713008	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55930917	0.84[EUR][1000 genomes]
rs6456733	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6456734	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6456735	0.94[ASW][hapmap];0.96[CEU][hapmap];0.81[GIH][hapmap];0.96[LWK][hapmap];0.99[MKK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6903973	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6909277	0.82[EUR][1000 genomes]
rs6910899	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910930	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913398	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6913462	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6913877	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6918360	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6918506	1.00[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6918854	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.96[LWK][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6922824	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6924838	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6924865	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925047	0.81[AMR][1000 genomes]
rs6925087	0.80[AFR][1000 genomes]
rs6925703	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925783	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6925895	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[LWK][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6926629	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6930120	1.00[CEU][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6932156	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6932350	0.82[EUR][1000 genomes]
rs6932865	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6933176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6940053	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6940188	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6941022	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs767471	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7753565	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs7767847	0.92[YRI][hapmap]
rs9295694	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295695	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295698	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9357010	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358952	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358954	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379887	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9393728	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393729	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393732	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9461259	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9461267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461270	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9461271	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9461272	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9461273	0.83[GIH][hapmap]
rs9461275	0.81[AFR][1000 genomes]
rs9461276	0.80[AFR][1000 genomes]
rs9467773	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9467774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9467775	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467776	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9467778	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467779	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467782	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9467783	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9467784	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9467787	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9467788	0.85[YRI][hapmap]
rs9467791	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9467796	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9467797	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9467798	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9467799	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9467800	1.00[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9467802	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9467805	0.82[AFR][1000 genomes]
rs9467810	0.85[GIH][hapmap];0.87[LWK][hapmap];0.93[YRI][hapmap]
rs9986382	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
4	nsv482836	chr6:26352883-26520964	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
6	esv3421845	chr6:26519998-26522546	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	39 gene(s)	inside rSNPs	diseases
7	esv3415199	chr6:26520373-26522371	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs1535276	DCDC2	cis	cerebellum	SCAN
rs1535276	ZNF204P	cis	cerebellum	SCAN
rs1535276	BTN3A3	cis	parietal	SCAN
rs1535276	HCG11	Cis_1M	lymphoblastoid	RTeQTL
rs1535276	BTN3A2	cis	lymphoblastoid	seeQTL
rs1535276	BTN3A2	cis	parietal	SCAN
rs1535276	BTN3A1	cis	parietal	SCAN
rs1535276	HMGN4	Cis_1M	lymphoblastoid	RTeQTL
rs1535276	HMGN4	cis	Whole Blood	GTEx
rs1535276	BTN3A3	cis	cerebellum	SCAN
rs1535276	ZNF322B	trans	lymphoblastoid	seeQTL
rs1535276	BTN3A1	cis	cerebellum	SCAN
rs1535276	BTN3A2	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26520400-26521000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr6:26520400-26521000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr6:26520400-26521000	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr6:26520400-26521000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
5	chr6:26520400-26521000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
6	chr6:26520400-26521000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:26520400-26521000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr6:26520400-26521000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr6:26520400-26521000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:26520400-26521000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:26520400-26521000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:26520400-26521000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr6:26520400-26521000	Flanking Active TSS	A549	lung
14	chr6:26520400-26521000	Flanking Active TSS	Dnd41	blood
15	chr6:26520400-26521000	Flanking Active TSS	GM12878-XiMat	blood
16	chr6:26520400-26521000	Flanking Active TSS	Hela-S3	cervix
17	chr6:26520400-26521000	Flanking Active TSS	HepG2	liver
18	chr6:26520400-26521000	Flanking Active TSS	HMEC	breast
19	chr6:26520400-26521000	Flanking Active TSS	K562	blood
20	chr6:26520400-26521000	Flanking Active TSS	NHEK	skin
21	chr6:26520400-26521000	Flanking Active TSS	Osteobl	bone
22	chr6:26520400-26521600	Active TSS	Liver	Liver
23	chr6:26520400-26522400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:26520400-26522800	Active TSS	Brain Angular Gyrus	brain
25	chr6:26520400-26522800	Active TSS	Fetal Lung	lung
26	chr6:26520400-26522800	Active TSS	HSMMtube	muscle
27	chr6:26520400-26523000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr6:26520400-26523000	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr6:26520400-26523200	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr6:26520600-26521000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:26520600-26521000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr6:26520600-26521000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:26520600-26521000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:26520600-26521000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
35	chr6:26520600-26521000	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr6:26520600-26521000	Flanking Active TSS	Primary B cells from peripheral blood	blood
37	chr6:26520600-26521000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
38	chr6:26520600-26521000	Flanking Active TSS	Primary hematopoietic stem cells	blood
39	chr6:26520600-26521000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr6:26520600-26521000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:26520600-26521000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:26520600-26521000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:26520600-26521000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
44	chr6:26520600-26521000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:26520600-26521000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr6:26520600-26521000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr6:26520600-26521000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:26520600-26521000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:26520600-26521000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:26520600-26521000	Flanking Active TSS	Adipose Nuclei	Adipose

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