Variant report

Variant	rs9467782
Chromosome Location	chr6:26542773-26542774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:26299666..26301325-chr6:26542047..26544114,2	K562	blood:
2	chr6:26283233..26285164-chr6:26541195..26542791,2	MCF-7	breast:
3	chr6:26541729..26543411-chr6:26576160..26577936,2	K562	blood:
4	chr6:26283501..26285151-chr6:26542189..26543890,2	K562	blood:
5	chr6:26541650..26546578-chr6:26547247..26553909,5	MCF-7	breast:
6	chr6:26541823..26543478-chr6:26553546..26555199,2	MCF-7	breast:

Extended variants
information (count: 137 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1001687	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1021372	0.93[YRI][hapmap]
rs10214634	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10223789	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10223792	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1027204	0.85[GIH][hapmap];0.87[LWK][hapmap];0.93[YRI][hapmap]
rs10484442	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1056347	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1056667	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1056668	0.85[EUR][1000 genomes]
rs1078679	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10946834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10946835	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10946837	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11752946	0.91[EUR][1000 genomes]
rs11754138	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11756120	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12526680	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12663883	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12663894	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12665431	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1321479	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1321480	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1321481	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1321482	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[LWK][hapmap];0.99[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1535276	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1535277	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1570059	1.00[CEU][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1570060	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1570061	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[LWK][hapmap];0.99[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1884946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1884947	1.00[CEU][hapmap];0.89[GIH][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes]
rs1884948	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1884949	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1977201	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2172007	0.85[GIH][hapmap]
rs2208331	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2224380	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2255070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2393669	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2393670	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2451741	0.85[GIH][hapmap];0.83[LWK][hapmap];0.93[YRI][hapmap]
rs2494692	0.93[YRI][hapmap]
rs2494701	0.85[GIH][hapmap];0.85[LWK][hapmap];0.93[YRI][hapmap]
rs2498380	0.85[GIH][hapmap];0.87[LWK][hapmap];0.93[YRI][hapmap]
rs2504565	0.84[GIH][hapmap];0.87[LWK][hapmap];0.89[YRI][hapmap]
rs2504566	0.89[YRI][hapmap]
rs2504567	0.85[GIH][hapmap];0.87[LWK][hapmap];0.89[YRI][hapmap]
rs2504571	0.85[GIH][hapmap];0.87[LWK][hapmap];0.89[YRI][hapmap]
rs2504599	0.85[GIH][hapmap];0.87[LWK][hapmap];0.96[YRI][hapmap]
rs2504600	0.85[GIH][hapmap];0.87[LWK][hapmap];0.89[YRI][hapmap]
rs28558133	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35355150	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3736781	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3736782	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3757151	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3800303	0.85[GIH][hapmap];0.89[LWK][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs4368798	0.85[GIH][hapmap];0.89[LWK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs4573	0.96[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.87[TSI][hapmap];0.94[EUR][1000 genomes]
rs4713006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713008	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55930917	0.90[EUR][1000 genomes]
rs6456733	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6456734	0.97[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6456735	0.94[ASW][hapmap];0.96[CEU][hapmap];0.81[GIH][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6903973	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6909277	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6910899	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6910930	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6913398	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913462	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6913877	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6918360	1.00[CEU][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6918506	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6918854	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[LWK][hapmap];0.99[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6922824	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6924838	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6924865	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6925087	0.81[AFR][1000 genomes]
rs6925703	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6925783	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6925895	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6926629	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6930120	1.00[CEU][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6932156	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6932350	0.90[EUR][1000 genomes]
rs6932865	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940053	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6940188	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6941022	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs767471	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7753565	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs7767847	0.88[YRI][hapmap]
rs9295694	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9295695	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9295698	0.97[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9357010	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9358952	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9358954	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9379887	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393728	0.84[AMR][1000 genomes]
rs9393729	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9393731	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9393732	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9461259	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9461267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9461270	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461271	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9461272	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9461273	0.83[GIH][hapmap]
rs9461275	0.82[AFR][1000 genomes]
rs9461276	0.81[AFR][1000 genomes]
rs9467773	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9467774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9467775	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9467776	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9467778	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467779	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467783	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467787	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9467788	0.89[YRI][hapmap]
rs9467791	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9467796	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9467797	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9467798	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9467799	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9467800	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9467802	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9467805	0.83[AFR][1000 genomes]
rs9467810	0.85[GIH][hapmap];0.89[LWK][hapmap];0.89[YRI][hapmap]
rs9986382	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs9467782	BTN3A3	cis	parietal	SCAN
rs9467782	DCDC2	cis	cerebellum	SCAN
rs9467782	BTN3A1	cis	cerebellum	SCAN
rs9467782	BTN3A2	cis	cerebellum	SCAN
rs9467782	ZNF322B	trans	lymphoblastoid	seeQTL
rs9467782	HCG11	cis	normal skin	skin_eQTL
rs9467782	BTN3A3	cis	cerebellum	SCAN
rs9467782	HCG11	cis	uninvolved skin	skin_eQTL
rs9467782	ZNF204P	cis	cerebellum	SCAN
rs9467782	BTN3A1	cis	parietal	SCAN
rs9467782	HCG11	Cis_1M	lymphoblastoid	RTeQTL
rs9467782	HMGN4	Cis_1M	lymphoblastoid	RTeQTL
rs9467782	HMGN4	cis	Whole Blood	GTEx
rs9467782	BTN3A2	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26539200-26545400	Weak transcription	Gastric	stomach
2	chr6:26539200-26550600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:26539400-26542800	Weak transcription	Liver	Liver
4	chr6:26539400-26546000	Weak transcription	Ovary	ovary
5	chr6:26539400-26550600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:26539600-26542800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:26539600-26543000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:26539600-26543200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:26539600-26544600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:26539600-26544800	Weak transcription	Psoas Muscle	Psoas
11	chr6:26539600-26544800	Weak transcription	HSMMtube	muscle
12	chr6:26539600-26545200	Weak transcription	Spleen	Spleen
13	chr6:26539600-26545400	Weak transcription	HUVEC	blood vessel
14	chr6:26539600-26549800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:26539600-26550400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:26539600-26550400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:26539600-26550400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:26539600-26550600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:26539600-26553000	Weak transcription	Fetal Heart	heart
20	chr6:26539800-26543000	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr6:26539800-26544800	Weak transcription	Left Ventricle	heart
22	chr6:26539800-26544800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:26539800-26545200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:26539800-26545200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr6:26539800-26550400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:26539800-26550400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:26539800-26550800	Weak transcription	Pancreas	Pancrea
28	chr6:26540000-26544800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr6:26540000-26545200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:26540000-26545400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:26540000-26545400	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:26540000-26550800	Weak transcription	Lung	lung
33	chr6:26540200-26542800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:26540200-26543000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:26540200-26545200	Weak transcription	Fetal Intestine Small	intestine
36	chr6:26540200-26545400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr6:26540200-26550000	Weak transcription	Fetal Kidney	kidney
38	chr6:26540200-26550400	Weak transcription	Colonic Mucosa	Colon
39	chr6:26540400-26542800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:26540400-26542800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:26540400-26542800	Weak transcription	Fetal Intestine Large	intestine
42	chr6:26540400-26543000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr6:26540400-26543000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:26540400-26543200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:26540400-26544800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:26540400-26544800	Weak transcription	Right Ventricle	heart
47	chr6:26540400-26545000	Weak transcription	Osteobl	bone
48	chr6:26540400-26545200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr6:26540400-26545200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:26540400-26545200	Weak transcription	Duodenum Mucosa	Duodenum

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