Variant report

Variant	rs1321479
Chromosome Location	chr6:26501897-26501898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:26501647..26503357-chr6:27772900..27774524,2	K562	blood:
2	chr6:26500256..26501997-chr6:26596237..26599100,2	K562	blood:

Variant related genes	Relation type
ENSG00000146109	Chromatin interaction

Extended variants
information (count: 138 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs1001687	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1021372	0.88[YRI][hapmap]
rs10214634	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10223789	0.87[AFR][1000 genomes]
rs10223792	0.85[AFR][1000 genomes]
rs1027204	0.82[GIH][hapmap];0.80[LWK][hapmap];0.88[YRI][hapmap]
rs10484442	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1056347	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1056667	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1056668	0.91[EUR][1000 genomes]
rs1078679	0.94[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10946834	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10946835	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10946837	0.87[EUR][1000 genomes]
rs11752946	0.81[EUR][1000 genomes]
rs11754138	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11756120	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12526680	0.96[CEU][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12663883	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12663894	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12665431	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1321480	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1321481	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1321482	0.94[ASW][hapmap];0.96[CEU][hapmap];0.89[GIH][hapmap];0.91[LWK][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1407045	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs1535276	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535277	0.83[AFR][1000 genomes]
rs1570059	0.96[CEU][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1570060	0.96[CEU][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1570061	0.94[ASW][hapmap];0.96[CEU][hapmap];0.89[GIH][hapmap];0.91[LWK][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1884946	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1884947	0.96[CEU][hapmap];0.85[GIH][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs1884948	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1884949	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1977201	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2024970	0.85[EUR][1000 genomes]
rs2145318	0.81[EUR][1000 genomes]
rs2172007	0.82[GIH][hapmap]
rs2208331	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2224380	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2255070	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2393669	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2393670	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2451741	0.82[GIH][hapmap];0.88[YRI][hapmap]
rs2494692	0.88[YRI][hapmap]
rs2494701	0.82[GIH][hapmap];0.88[YRI][hapmap]
rs2498380	0.82[GIH][hapmap];0.80[LWK][hapmap];0.88[YRI][hapmap]
rs2504565	0.82[GIH][hapmap];0.80[LWK][hapmap];0.85[YRI][hapmap]
rs2504566	0.85[YRI][hapmap]
rs2504567	0.82[GIH][hapmap];0.80[LWK][hapmap];0.85[YRI][hapmap]
rs2504571	0.82[GIH][hapmap];0.80[LWK][hapmap];0.85[YRI][hapmap]
rs2504599	0.82[GIH][hapmap];0.80[LWK][hapmap];0.92[YRI][hapmap]
rs2504600	0.82[GIH][hapmap];0.80[LWK][hapmap];0.85[YRI][hapmap]
rs28558133	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35355150	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3736781	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3736782	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3757151	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3800303	0.82[GIH][hapmap];0.83[LWK][hapmap];0.88[YRI][hapmap]
rs4368798	0.82[GIH][hapmap];0.83[LWK][hapmap];0.85[YRI][hapmap]
rs4573	0.92[CEU][hapmap];0.84[CHB][hapmap];0.86[GIH][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs4713006	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713008	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4871	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55930917	0.81[EUR][1000 genomes]
rs6456733	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6456734	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6456735	0.94[ASW][hapmap];0.92[CEU][hapmap];0.91[LWK][hapmap];0.89[MKK][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6903973	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910899	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6910930	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6913398	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6913462	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6913877	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6918360	0.96[CEU][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6918506	0.96[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6918854	0.94[ASW][hapmap];0.96[CEU][hapmap];0.89[GIH][hapmap];0.91[LWK][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6922824	0.94[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6924838	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6924865	0.94[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6925703	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6925783	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6925895	0.94[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6926629	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930120	0.96[CEU][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6932156	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6932865	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6933176	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6940053	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6940188	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6941022	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs767471	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7753565	0.96[CEU][hapmap];0.96[YRI][hapmap]
rs7767847	0.84[YRI][hapmap]
rs9295689	0.82[CEU][hapmap]
rs9295694	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295695	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295698	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9357010	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358952	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9358954	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9379887	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9393728	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393729	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393731	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393732	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9461259	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9461267	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9461270	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9461271	0.94[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9461272	0.96[CEU][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs9461273	0.81[GIH][hapmap]
rs9467773	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9467774	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467775	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9467776	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467778	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9467779	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9467782	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467783	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467784	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9467787	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9467788	0.89[YRI][hapmap]
rs9467791	0.94[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9467796	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9467797	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9467798	0.96[CEU][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9467799	0.85[AFR][1000 genomes]
rs9467800	0.96[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs9467802	0.87[AFR][1000 genomes]
rs9467810	0.82[GIH][hapmap];0.83[LWK][hapmap];0.85[YRI][hapmap]
rs9986382	0.94[ASW][hapmap];0.96[CEU][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
4	nsv482836	chr6:26352883-26520964	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
6	nsv1031938	chr6:26467182-26501897	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1321479	HMGN4	cis	Whole Blood	GTEx
rs1321479	BTN3A2	cis	multi-tissue	Pritchard
rs1321479	HMGN4	cis	lesional skin	skin_eQTL
rs1321479	ZNF322B	trans	multi-tissue	Pritchard
rs1321479	HCG11	cis	normal skin	skin_eQTL
rs1321479	BTN2A2	cis	multi-tissue	Pritchard

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26500600-26502400	Enhancers	K562	blood
2	chr6:26501400-26502000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
3	chr6:26501400-26502200	Enhancers	Lung	lung
4	chr6:26501400-26502400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr6:26501400-26502400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:26501400-26502400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
7	chr6:26501400-26502400	Flanking Bivalent TSS/Enh	HepG2	liver
8	chr6:26501600-26502000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:26501600-26502000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:26501600-26502000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:26501600-26502000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
12	chr6:26501600-26502000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:26501600-26502000	Active TSS	Aorta	Aorta
14	chr6:26501600-26502000	Bivalent Enhancer	Liver	Liver
15	chr6:26501600-26502000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
16	chr6:26501600-26502000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:26501600-26502000	Active TSS	Brain Substantia Nigra	brain
18	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
20	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
24	chr6:26501600-26502200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
25	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
26	chr6:26501600-26502200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
27	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
28	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
29	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
30	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
31	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
32	chr6:26501600-26502200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
33	chr6:26501600-26502200	Flanking Active TSS	Right Atrium	heart
34	chr6:26501600-26502200	Bivalent Enhancer	Stomach Mucosa	stomach
35	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
36	chr6:26501600-26502200	Flanking Bivalent TSS/Enh	NHEK	skin
37	chr6:26501600-26502400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
38	chr6:26501600-26502400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr6:26501600-26502400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:26501600-26502400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
41	chr6:26501600-26502400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
42	chr6:26501600-26502400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
43	chr6:26501600-26502400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
47	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:26501600-26502400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain

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