Variant report

Variant	rs10946834
Chromosome Location	chr6:26533664-26533665
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr6:26532732-26533693	K562	blood:	n/a	n/a
2	MAZ	chr6:26532888-26533685	GM12878	blood:	n/a	chr6:26533407-26533416
3	MAX	chr6:26532907-26533683	Hela-S3	cervix:	n/a	chr6:26533407-26533416
4	KAP1	chr6:26532853-26533732	U2OS	brain:	n/a	chr6:26532905-26532913
5	TEAD4	chr6:26533031-26533708	H1-hESC	embryonic stem cell:	n/a	n/a
6	TEAD4	chr6:26532465-26533689	K562	blood:	n/a	n/a
7	POLR2A	chr6:26532890-26533708	SK-N-SH	brain:	n/a	n/a
8	TCF12	chr6:26532773-26533784	A549	lung:	n/a	n/a
9	POLR2A	chr6:26533001-26533724	Hela-S3	cervix:	n/a	n/a
10	FOSL2	chr6:26532805-26533830	SK-N-SH	brain:	n/a	n/a
11	NFIC	chr6:26532878-26533676	HepG2	liver:	n/a	chr6:26533348-26533364
12	POLR2A	chr6:26533400-26533697	Hela-S3	cervix:	n/a	n/a
13	MAZ	chr6:26533024-26533705	K562	blood:	n/a	chr6:26533407-26533416
14	CBX3	chr6:26532814-26533829	HCT-116	colon:	n/a	n/a
15	MAX	chr6:26532885-26533725	SK-N-SH	brain:	n/a	chr6:26533407-26533416
16	POLR2A	chr6:26533508-26533689	ProgFib	skin:	n/a	n/a
17	MAX	chr6:26532982-26533711	ECC-1	luminal epithelium:	n/a	chr6:26533407-26533416
18	TEAD4	chr6:26532376-26533764	K562	blood:	n/a	n/a
19	TFAP2C	chr6:26533021-26533728	Hela-S3	cervix:	n/a	n/a
20	UBTF	chr6:26533031-26533688	K562	blood:	n/a	n/a
21	POLR2A	chr6:26533018-26533715	H1-neurons	neurons:	n/a	n/a
22	CBX3	chr6:26532684-26533687	K562	blood:	n/a	n/a
23	ATF3	chr6:26532666-26533727	A549	lung:	n/a	chr6:26533454-26533463
24	REST	chr6:26532794-26533913	H1-neurons	neurons:	n/a	n/a
25	KAP1	chr6:26532870-26533686	HEK293	kidney:	n/a	chr6:26532905-26532913
26	ZNF263	chr6:26532883-26533762	HEK293-T-REx	kidney:	n/a	chr6:26533414-26533435
27	TEAD4	chr6:26532831-26533893	HepG2	liver:	n/a	n/a
28	NFIC	chr6:26532795-26533884	SK-N-SH	brain:	n/a	chr6:26533348-26533364
29	GTF3C2	chr6:26532771-26533857	Hela-S3	cervix:	n/a	n/a
30	TCF7L2	chr6:26532767-26533722	HEK293	kidney:	n/a	chr6:26533057-26533066
31	RCOR1	chr6:26533032-26533786	Hela-S3	cervix:	n/a	n/a
32	RELA	chr6:26532874-26533690	GM19099	blood:	n/a	n/a
33	NFIC	chr6:26532826-26533717	ECC-1	luminal epithelium:	n/a	chr6:26533348-26533364
34	POLR2A	chr6:26532902-26533720	SK-N-MC	brain:	n/a	n/a
35	MAX	chr6:26532893-26533765	A549	lung:	n/a	chr6:26533407-26533416
36	TEAD4	chr6:26532822-26533787	SK-N-SH	brain:	n/a	n/a
37	TEAD4	chr6:26532872-26533960	ECC-1	luminal epithelium:	n/a	n/a
38	STAT3	chr6:26532967-26533819	Hela-S3	cervix:	n/a	chr6:26533430-26533442
39	POLR2A	chr6:26532973-26533758	SK-N-MC	brain:	n/a	n/a
40	TFAP2A	chr6:26533045-26533782	Hela-S3	cervix:	n/a	chr6:26533457-26533468 chr6:26533457-26533468 chr6:26533458-26533466 chr6:26533457-26533468 chr6:26533459-26533467 chr6:26533458-26533466 chr6:26533457-26533468 chr6:26533459-26533467 chr6:26533457-26533468 chr6:26533458-26533466 chr6:26533459-26533467
41	POLR2A	chr6:26532955-26533760	H1-neurons	neurons:	n/a	n/a
42	POLR2A	chr6:26533420-26533664	Hela-S3	cervix:	n/a	n/a
43	MYBL2	chr6:26532673-26533751	HepG2	liver:	n/a	n/a
44	MYBL2	chr6:26532623-26533695	HepG2	liver:	n/a	n/a
45	SIN3AK20	chr6:26532979-26533700	SK-N-SH	brain:	n/a	n/a
46	MAX	chr6:26532796-26533796	A549	lung:	n/a	chr6:26533407-26533416
47	MAZ	chr6:26533041-26533670	Hela-S3	cervix:	n/a	chr6:26533407-26533416
48	CBX3	chr6:26532850-26533782	HCT-116	colon:	n/a	n/a
49	SREBP2	chr6:26532258-26534057	GM12878	blood:	n/a	n/a
50	MTA3	chr6:26532667-26533775	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:26311628..26314659-chr6:26531812..26534780,3	K562	blood:
2	chr6:26421115..26423072-chr6:26532607..26534934,2	K562	blood:
3	chr6:26533371..26536104-chr6:27090402..27093172,2	K562	blood:
4	chr6:26532421..26535211-chr6:26570479..26571983,2	MCF-7	breast:
5	chr6:26215522..26217770-chr6:26533017..26534753,2	K562	blood:
6	chr6:26520237..26523197-chr6:26533292..26535443,5	MCF-7	breast:
7	chr6:26378690..26380275-chr6:26532676..26534577,2	K562	blood:
8	chr6:26318172..26320821-chr6:26533523..26535253,2	K562	blood:

Variant related genes	Relation type
HMGN4	TF binding region
ENSG00000228223	Chromatin interaction
ENSG00000124549	Chromatin interaction
ENSG00000272468	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000168274	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1001687	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1021372	0.93[YRI][hapmap]
rs10214634	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10223789	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10223792	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1027204	0.93[YRI][hapmap]
rs10484442	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1056347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1056667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1056668	0.93[EUR][1000 genomes]
rs1078679	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10946835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946837	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11752946	0.83[EUR][1000 genomes]
rs11754138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526680	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12663883	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12663894	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12665431	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1321479	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1321480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321481	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1321482	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1535274	0.81[AMR][1000 genomes]
rs1535276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535277	0.87[AFR][1000 genomes]
rs1570059	1.00[CEU][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1570060	1.00[CEU][hapmap];0.97[YRI][hapmap];0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1570061	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1884946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1884947	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1884948	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1884949	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1977201	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2024970	0.83[EUR][1000 genomes]
rs2208331	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2224380	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2255070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2393669	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2393670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2451741	0.93[YRI][hapmap]
rs2494692	0.93[YRI][hapmap]
rs2494701	0.93[YRI][hapmap]
rs2498380	0.93[YRI][hapmap]
rs2504565	0.89[YRI][hapmap]
rs2504566	0.90[YRI][hapmap]
rs2504567	0.89[YRI][hapmap]
rs2504571	0.89[YRI][hapmap]
rs2504599	0.96[YRI][hapmap]
rs2504600	0.89[YRI][hapmap]
rs28558133	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35355150	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3736781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3736782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3757151	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3800303	0.93[YRI][hapmap]
rs4343916	0.81[AMR][1000 genomes]
rs4368798	0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs4573	0.96[CEU][hapmap];0.84[CHB][hapmap];0.86[EUR][1000 genomes]
rs4713006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713008	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55930917	0.84[EUR][1000 genomes]
rs6456733	1.00[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6456734	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6456735	0.95[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6903973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6909277	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6910899	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913398	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6913462	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6913877	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6918360	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6918506	1.00[CEU][hapmap];0.97[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6918854	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6922824	1.00[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6924838	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6924865	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925047	0.81[AMR][1000 genomes]
rs6925703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925783	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6925895	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6926629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6930120	1.00[CEU][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6932156	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6932350	0.82[EUR][1000 genomes]
rs6932865	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6933176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6940053	0.98[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6940188	0.98[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6941022	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs767471	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7753565	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7767847	0.89[YRI][hapmap]
rs9295694	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295698	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9357010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358952	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9358954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379887	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9393728	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9461259	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9461267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9461271	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9461272	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9461275	0.80[AFR][1000 genomes]
rs9467773	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9467774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9467775	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467776	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9467778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9467782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9467783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9467784	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9467787	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9467788	0.90[YRI][hapmap]
rs9467791	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9467796	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9467797	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9467798	1.00[CEU][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9467799	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9467800	1.00[CEU][hapmap];0.97[YRI][hapmap];0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9467802	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9467805	0.81[AFR][1000 genomes]
rs9467810	0.89[YRI][hapmap]
rs9986382	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10946834	HCG11	cis	normal skin	skin_eQTL
rs10946834	HCG11	Cis_1M	lymphoblastoid	RTeQTL
rs10946834	HMGN4	cis	Whole Blood	GTEx
rs10946834	HMGN4	Cis_1M	lymphoblastoid	RTeQTL
rs10946834	HCG11	cis	uninvolved skin	skin_eQTL
rs10946834	ZNF322	cis	Nerve Tibial	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26532400-26534000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:26532400-26534000	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr6:26532400-26534000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:26532600-26534000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr6:26532600-26534000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr6:26532800-26533800	Active TSS	Aorta	Aorta
7	chr6:26532800-26533800	Flanking Active TSS	Liver	Liver
8	chr6:26532800-26533800	Active TSS	Brain Hippocampus Middle	brain
9	chr6:26532800-26534000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr6:26532800-26534000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:26532800-26534000	Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr6:26532800-26534000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:26532800-26534000	Active TSS	Brain Anterior Caudate	brain
14	chr6:26532800-26534000	Active TSS	Thymus	Thymus
15	chr6:26532800-26534200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:26532800-26534400	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:26532800-26535000	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:26533000-26533800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:26533000-26533800	Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr6:26533000-26533800	Active TSS	Colon Smooth Muscle	Colon
21	chr6:26533000-26533800	Active TSS	Duodenum Mucosa	Duodenum
22	chr6:26533000-26533800	Active TSS	Fetal Intestine Small	intestine
23	chr6:26533000-26533800	Active TSS	Rectal Smooth Muscle	rectum
24	chr6:26533000-26533800	Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr6:26533000-26534000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:26533000-26534000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:26533000-26534000	Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr6:26533000-26534000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:26533000-26534000	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr6:26533000-26534000	Active TSS	Adipose Nuclei	Adipose
31	chr6:26533000-26534000	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr6:26533000-26534000	Active TSS	Fetal Muscle Trunk	muscle
33	chr6:26533000-26534000	Active TSS	Fetal Thymus	thymus
34	chr6:26533000-26534000	Active TSS	HSMM	muscle
35	chr6:26533000-26534000	Active TSS	HUVEC	blood vessel
36	chr6:26533000-26534000	Active TSS	NHEK	skin
37	chr6:26533000-26534200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:26533000-26534200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr6:26533000-26534200	Active TSS	Fetal Brain Female	brain
40	chr6:26533000-26534200	Active TSS	Fetal Kidney	kidney
41	chr6:26533000-26534200	Active TSS	K562	blood
42	chr6:26533000-26534400	Active TSS	HUES64 Cell Line	embryonic stem cell
43	chr6:26533000-26534400	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr6:26533000-26534400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:26533200-26533800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:26533200-26533800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:26533200-26533800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:26533200-26533800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:26533200-26533800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
50	chr6:26533200-26533800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood

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