Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:27101946..27104264-chr6:27136179..27138427,2	MCF-7	breast:
2	chr6:27115301..27117506-chr6:27136265..27137809,2	MCF-7	breast:
3	chr6:27134929..27137913-chr6:27796376..27797878,2	MCF-7	breast:
4	chr6:27120589..27123058-chr6:27135123..27137850,2	MCF-7	breast:
5	chr6:27134151..27137360-chr6:27861915..27865428,4	MCF-7	breast:
6	chr6:27135834..27138150-chr6:27143711..27145656,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265565	Chromatin interaction
ENSG00000238610	Chromatin interaction

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58536903	1.00[EUR][1000 genomes]
rs9461331	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467993	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468003	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27135600-27137000	Enhancers	NHDF-Ad	bronchial
2	chr6:27135600-27137000	Enhancers	NHLF	lung
3	chr6:27135600-27137200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:27135800-27137000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:27135800-27137000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:27135800-27137000	Enhancers	HUVEC	blood vessel
7	chr6:27135800-27137000	Enhancers	NHEK	skin
8	chr6:27135800-27137400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:27135800-27137400	Enhancers	K562	blood
10	chr6:27135800-27137600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:27136000-27137000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr6:27136000-27137000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:27136000-27137200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:27136200-27137000	Enhancers	HSMM	muscle
15	chr6:27136200-27137000	Enhancers	NH-A	brain
16	chr6:27136200-27137400	Enhancers	Hela-S3	cervix
17	chr6:27136400-27137600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:27136600-27137000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:27136800-27137000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:27136800-27137400	Enhancers	Osteobl	bone
21	chr6:27136800-27143800	Weak transcription	HSMMtube	muscle

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