Variant report

Variant	rs9468001
Chromosome Location	chr6:27141968-27141969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27140704..27142960-chr6:27805075..27807684,3	K562	blood:
2	chr6:27140467..27142288-chr6:27771124..27773202,2	K562	blood:
3	chr6:27132811..27135615-chr6:27140757..27142291,2	MCF-7	breast:
4	chr6:27140194..27142369-chr6:27860790..27862310,2	K562	blood:
5	chr6:27139332..27142276-chr6:27356388..27358330,2	K562	blood:
6	chr6:27140776..27143304-chr6:27356728..27358330,2	K562	blood:
7	chr6:27130865..27132489-chr6:27141029..27143301,2	MCF-7	breast:
8	chr6:27141325..27142925-chr6:27790869..27793347,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000196331	Chromatin interaction
ENSG00000124613	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000184348	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58536903	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9461331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461333	0.84[AFR][1000 genomes]
rs9467993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467995	0.84[AFR][1000 genomes]
rs9467998	0.84[AFR][1000 genomes]
rs9467999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468002	0.84[AFR][1000 genomes]
rs9468003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27136800-27143800	Weak transcription	HSMMtube	muscle
2	chr6:27137400-27143800	Weak transcription	Hela-S3	cervix
3	chr6:27137400-27144000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:27137600-27144000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:27138200-27144000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:27141000-27144400	Weak transcription	Fetal Kidney	kidney
7	chr6:27141800-27142400	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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