Variant report

Variant	rs9469629
Chromosome Location	chr6:33884887-33884888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1107713	0.89[ASN][1000 genomes]
rs12191571	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12204774	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12216099	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12216193	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12216247	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56673015	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59611552	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73744932	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9461928	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9461929	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469625	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469626	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469627	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469628	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469631	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469632	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469633	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469634	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33874200-33889200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:33883200-33889600	Weak transcription	Spleen	Spleen
3	chr6:33883400-33885600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:33883800-33890000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:33883800-33891400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:33884000-33890600	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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