Variant report

Variant	rs9469634
Chromosome Location	chr6:33889865-33889866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33889301..33891295-chr6:33893336..33896618,3	MCF-7	breast:
2	chr6:33887758..33891673-chr6:33891780..33895604,5	K562	blood:
3	chr6:33888441..33890846-chr6:33895660..33897379,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1107713	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12191571	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199670	0.82[YRI][hapmap]
rs12204774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216099	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216247	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869677	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[ASN][1000 genomes]
rs56334904	0.82[ASN][1000 genomes]
rs56673015	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59611552	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73744913	0.82[ASN][1000 genomes]
rs73744932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461928	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461929	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469624	1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[ASN][1000 genomes]
rs9469625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469627	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469628	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469629	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469632	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469633	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33883800-33890000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:33883800-33891400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:33884000-33890600	Weak transcription	Fetal Thymus	thymus
4	chr6:33885200-33891600	Weak transcription	Pancreas	Pancrea
5	chr6:33886600-33894600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:33887400-33890600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:33889600-33890000	Enhancers	Fetal Muscle Trunk	muscle
8	chr6:33889600-33890600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:33889600-33891400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:33889600-33892400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:33889800-33891600	Weak transcription	Spleen	Spleen
12	chr6:33889800-33892400	Enhancers	Primary T cells fromperipheralblood	blood
13	chr6:33889800-33893200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links