Variant report

Variant	rs9469915
Chromosome Location	chr6:34829587-34829588
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34828049..34830008-chr6:34830119..34831858,2	K562	blood:
2	chr6:34828677..34833050-chr6:34855355..34860063,5	K562	blood:
3	chr6:34827930..34830077-chr6:34830559..34833296,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000064995	Chromatin interaction
ENSG00000064999	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12332962	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4646913	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6899471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462035	0.90[AFR][1000 genomes]
rs9469903	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469928	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
9	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv1028363	chr6:34733071-34859045	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv1015792	chr6:34741917-34887316	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv1021733	chr6:34751052-34887316	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv1026121	chr6:34786887-34961360	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
15	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
16	nsv1033135	chr6:34802652-34957093	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34779400-34841000	Weak transcription	NH-A	brain
2	chr6:34786600-34838800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:34788200-34831800	Weak transcription	HUVEC	blood vessel
4	chr6:34788400-34830800	Weak transcription	Fetal Heart	heart
5	chr6:34816800-34853600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:34817400-34851200	Strong transcription	Fetal Thymus	thymus
7	chr6:34818200-34829600	Strong transcription	HepG2	liver
8	chr6:34818600-34832800	Strong transcription	Fetal Stomach	stomach
9	chr6:34818600-34853400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:34819000-34832000	Strong transcription	Fetal Intestine Large	intestine
11	chr6:34819000-34833000	Strong transcription	Liver	Liver
12	chr6:34819000-34842600	Strong transcription	Fetal Intestine Small	intestine
13	chr6:34819200-34833400	Strong transcription	Primary B cells from peripheral blood	blood
14	chr6:34819400-34831400	Weak transcription	Right Atrium	heart
15	chr6:34820200-34855000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:34821000-34854600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:34822400-34829800	Strong transcription	Dnd41	blood
18	chr6:34822400-34831400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:34822600-34829800	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:34822600-34829800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr6:34822800-34829600	Strong transcription	Lung	lung
22	chr6:34822800-34829800	Strong transcription	Placenta	Placenta
23	chr6:34822800-34830000	Strong transcription	Primary hematopoietic stem cells	blood
24	chr6:34822800-34833600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:34822800-34849400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr6:34823000-34829600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:34823000-34829800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:34823000-34829800	Strong transcription	Primary B cells from cord blood	blood
29	chr6:34823000-34829800	Strong transcription	Stomach Smooth Muscle	stomach
30	chr6:34823000-34830000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:34823000-34832200	Strong transcription	Fetal Muscle Trunk	muscle
32	chr6:34823000-34832600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:34823000-34851600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:34823200-34829800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:34823200-34829800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:34823200-34829800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:34823400-34829800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:34823400-34829800	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr6:34823400-34839400	Weak transcription	HMEC	breast
40	chr6:34823600-34829600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:34823600-34829600	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr6:34823800-34829800	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr6:34825400-34839800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:34825800-34847600	Weak transcription	NHDF-Ad	bronchial
45	chr6:34826000-34840000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:34826200-34835000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr6:34826600-34835200	Weak transcription	Psoas Muscle	Psoas
48	chr6:34826800-34838800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:34826800-34839000	Weak transcription	NHEK	skin
50	chr6:34827000-34831400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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