Variant report

Variant	rs9469938
Chromosome Location	chr6:35050722-35050723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35050024..35051706-chr6:35112716..35114332,2	K562	blood:
2	chr6:35050342..35053093-chr6:35053123..35054813,2	K562	blood:
3	chr6:35049328..35051932-chr6:35226008..35227575,2	K562	blood:

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10456429	0.83[AFR][1000 genomes]
rs12154140	0.83[AFR][1000 genomes]
rs12332962	0.83[YRI][hapmap]
rs35395160	1.00[EUR][1000 genomes]
rs4713839	1.00[EUR][1000 genomes]
rs7755499	1.00[AMR][1000 genomes]
rs9462039	1.00[AMR][1000 genomes]
rs9469928	0.83[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv869750	chr6:35031548-35085585	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
2	chr6:35017800-35053000	Weak transcription	Small Intestine	intestine
3	chr6:35018400-35052800	Weak transcription	Fetal Kidney	kidney
4	chr6:35018600-35051000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:35018800-35060600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:35020000-35059800	Strong transcription	Fetal Intestine Small	intestine
7	chr6:35020400-35059400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:35021800-35055400	Weak transcription	HSMM	muscle
9	chr6:35024800-35062000	Weak transcription	A549	lung
10	chr6:35025600-35056000	Strong transcription	Liver	Liver
11	chr6:35026600-35059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:35028600-35060000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:35029000-35050800	Weak transcription	NHLF	lung
14	chr6:35029400-35051400	Weak transcription	Stomach Mucosa	stomach
15	chr6:35029800-35051200	Weak transcription	Osteobl	bone
16	chr6:35032800-35051200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:35036200-35059200	Strong transcription	Primary T cells from cord blood	blood
18	chr6:35036800-35056200	Strong transcription	Fetal Stomach	stomach
19	chr6:35037000-35061800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:35039400-35060600	Strong transcription	Fetal Intestine Large	intestine
21	chr6:35039600-35051000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:35039800-35051800	Strong transcription	HSMMtube	muscle
23	chr6:35040000-35057000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:35041800-35056800	Weak transcription	Fetal Heart	heart
25	chr6:35042200-35059200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:35044400-35058800	Strong transcription	Duodenum Mucosa	Duodenum
27	chr6:35044600-35057600	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr6:35044600-35058200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:35044800-35055600	Strong transcription	Aorta	Aorta
30	chr6:35044800-35056800	Strong transcription	Rectal Smooth Muscle	rectum
31	chr6:35044800-35057800	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr6:35044800-35058800	Strong transcription	Gastric	stomach
33	chr6:35044800-35059000	Strong transcription	Left Ventricle	heart
34	chr6:35045000-35052000	Strong transcription	Primary B cells from peripheral blood	blood
35	chr6:35045000-35057000	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:35045000-35057000	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:35045000-35057800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:35045000-35059000	Strong transcription	Pancreas	Pancrea
39	chr6:35045200-35057000	Strong transcription	Fetal Brain Female	brain
40	chr6:35045200-35057400	Strong transcription	Ovary	ovary
41	chr6:35045200-35057800	Strong transcription	Brain Germinal Matrix	brain
42	chr6:35045200-35059400	Strong transcription	Thymus	Thymus
43	chr6:35045400-35056800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:35045600-35057200	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr6:35045800-35051600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:35045800-35052000	Strong transcription	Brain Angular Gyrus	brain
47	chr6:35046200-35055600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:35046400-35057800	Strong transcription	Fetal Lung	lung
49	chr6:35048000-35050800	Genic enhancers	Placenta	Placenta
50	chr6:35048000-35052400	Genic enhancers	Fetal Muscle Leg	muscle

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