Variant report

Variant	rs35395160
Chromosome Location	chr6:35280183-35280184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35271752..35272749-chr6:35280146..35281158,10	MCF-7	breast:
2	chr6:35271869..35272787-chr6:35280174..35280771,4	MCF-7	breast:
3	chr6:35279156..35280875-chr6:35287560..35289237,2	MCF-7	breast:
4	chr6:35275753..35280306-chr6:35283312..35286403,4	MCF-7	breast:
5	chr6:35278958..35282229-chr6:35283892..35290479,5	K562	blood:

Variant related genes	Relation type
ENSG00000023892	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34522601	1.00[EUR][1000 genomes]
rs4713839	1.00[EUR][1000 genomes]
rs56849484	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469938	1.00[EUR][1000 genomes]
rs9470032	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35265200-35285600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:35271400-35285000	Weak transcription	HepG2	liver
3	chr6:35271600-35285200	Weak transcription	Fetal Intestine Large	intestine
4	chr6:35271600-35285600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:35272400-35284600	Weak transcription	HMEC	breast
6	chr6:35272400-35285400	Weak transcription	Gastric	stomach
7	chr6:35272600-35280200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:35276000-35293800	Weak transcription	K562	blood
9	chr6:35276800-35280600	Strong transcription	Fetal Intestine Small	intestine
10	chr6:35276800-35281000	Strong transcription	NHEK	skin
11	chr6:35277000-35281600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:35277000-35285400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:35277400-35280600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:35277600-35280600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:35278000-35281000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:35278200-35280200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr6:35278200-35280600	Enhancers	Fetal Muscle Leg	muscle
18	chr6:35278200-35285600	Weak transcription	Colonic Mucosa	Colon
19	chr6:35278400-35280400	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
20	chr6:35278400-35280400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr6:35278400-35280600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:35278600-35280200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:35278600-35280600	Enhancers	Liver	Liver
24	chr6:35278600-35285400	Weak transcription	Pancreas	Pancrea
25	chr6:35278800-35280200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr6:35278800-35280200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
27	chr6:35278800-35280400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:35279000-35280200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr6:35279000-35280200	Enhancers	Left Ventricle	heart
30	chr6:35279000-35280600	Enhancers	Lung	lung
31	chr6:35279000-35285400	Weak transcription	Esophagus	oesophagus
32	chr6:35279000-35285600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:35279200-35280200	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr6:35279200-35280600	Genic enhancers	Placenta	Placenta
35	chr6:35279200-35280800	Enhancers	Adipose Nuclei	Adipose
36	chr6:35279200-35282600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:35279400-35280400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:35279400-35285400	Weak transcription	Right Atrium	heart
39	chr6:35279600-35280200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:35279600-35280200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr6:35279600-35280200	Genic enhancers	GM12878-XiMat	blood
42	chr6:35279600-35280600	Genic enhancers	Spleen	Spleen
43	chr6:35279600-35282000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:35279800-35280200	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr6:35279800-35280200	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr6:35279800-35280400	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
47	chr6:35279800-35280400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:35279800-35280400	Strong transcription	Fetal Stomach	stomach
49	chr6:35279800-35280600	Enhancers	Fetal Muscle Trunk	muscle
50	chr6:35279800-35280800	Enhancers	Rectal Mucosa Donor 29	rectum

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