Variant report

Variant	rs9470086
Chromosome Location	chr6:35709678-35709679
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35705625..35707996-chr6:35708149..35710885,2	K562	blood:
2	chr6:35450192..35452649-chr6:35708283..35711232,2	MCF-7	breast:
3	chr6:35697883..35699613-chr6:35708229..35709821,2	K562	blood:
4	chr6:35704031..35707309-chr6:35709385..35713592,5	K562	blood:
5	chr6:35703462..35706087-chr6:35709122..35710658,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157343	Chromatin interaction
ENSG00000232909	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11968757	0.87[AFR][1000 genomes]
rs2766597	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2817017	1.00[CEU][hapmap]
rs4711421	1.00[EUR][1000 genomes]
rs57155120	1.00[EUR][1000 genomes]
rs57744001	1.00[EUR][1000 genomes]
rs57985230	1.00[EUR][1000 genomes]
rs58549426	1.00[EUR][1000 genomes]
rs59520042	1.00[EUR][1000 genomes]
rs59590692	1.00[EUR][1000 genomes]
rs60103601	1.00[EUR][1000 genomes]
rs60867971	1.00[EUR][1000 genomes]
rs61731466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6457861	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv1028947	chr6:35670521-35714541	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
11	nsv885805	chr6:35685955-35779879	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35700800-35710400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:35705400-35710400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:35705800-35724600	Weak transcription	Fetal Brain Male	brain
4	chr6:35706400-35710400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:35708200-35710400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:35708200-35710400	Enhancers	HepG2	liver
7	chr6:35708200-35710600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:35708400-35710600	Weak transcription	Spleen	Spleen
9	chr6:35708600-35713200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:35709000-35709800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:35709000-35710400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:35709000-35710400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:35709200-35710200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:35709200-35710400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:35709200-35710400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:35709200-35710400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:35709200-35710400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:35709200-35710400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:35709200-35710400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:35709200-35710400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:35709200-35710600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:35709200-35710800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:35709400-35710400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr6:35709600-35710200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:35709600-35722600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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