Variant report

Variant	rs6457861
Chromosome Location	chr6:35813488-35813489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35808180..35810275-chr6:35813172..35814934,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2237095	1.00[CEU][hapmap]
rs2766597	1.00[CEU][hapmap]
rs2817017	1.00[CEU][hapmap]
rs584884	1.00[CEU][hapmap]
rs612049	1.00[CEU][hapmap]
rs7753664	1.00[CHB][hapmap]
rs7762801	1.00[CHB][hapmap]
rs7774786	1.00[CEU][hapmap]
rs7774934	1.00[CEU][hapmap]
rs9348984	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9462126	1.00[EUR][1000 genomes]
rs9470086	1.00[CEU][hapmap]
rs9470207	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35787800-35855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35791400-35824200	Weak transcription	Fetal Brain Male	brain
3	chr6:35791600-35819800	Weak transcription	NHLF	lung
4	chr6:35798200-35823800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:35799600-35837200	Weak transcription	Fetal Kidney	kidney
6	chr6:35799800-35823000	Weak transcription	Colonic Mucosa	Colon
7	chr6:35800000-35816200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:35800000-35823800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:35800400-35816000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:35800400-35816200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:35800400-35816400	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:35800600-35816400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:35800600-35816400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:35800600-35859000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:35801000-35813800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:35801000-35832600	Strong transcription	Fetal Thymus	thymus
17	chr6:35801000-35840600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:35801200-35819800	Weak transcription	Spleen	Spleen
19	chr6:35801200-35824000	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:35801200-35826400	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:35801200-35837200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:35801200-35849000	Strong transcription	Dnd41	blood
23	chr6:35801400-35813600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:35801400-35816000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:35801400-35816800	Strong transcription	Primary T cells from cord blood	blood
26	chr6:35801400-35832400	Strong transcription	HepG2	liver
27	chr6:35801600-35816200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:35801600-35816200	Weak transcription	Psoas Muscle	Psoas
29	chr6:35801800-35827800	Weak transcription	Brain Substantia Nigra	brain
30	chr6:35801800-35828800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:35802000-35816200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr6:35802000-35824000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr6:35803000-35819800	Weak transcription	HSMMtube	muscle
34	chr6:35803000-35823600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr6:35803200-35819000	Weak transcription	Ovary	ovary
36	chr6:35803200-35823600	Weak transcription	Esophagus	oesophagus
37	chr6:35803200-35828800	Weak transcription	Pancreas	Pancrea
38	chr6:35803400-35816200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:35803400-35816400	Weak transcription	Right Ventricle	heart
40	chr6:35803400-35817000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr6:35803400-35823800	Weak transcription	Aorta	Aorta
42	chr6:35803400-35823800	Weak transcription	Small Intestine	intestine
43	chr6:35803800-35823400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:35804000-35823800	Weak transcription	Gastric	stomach
45	chr6:35804400-35849000	Strong transcription	K562	blood
46	chr6:35804600-35823200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr6:35805200-35816200	Weak transcription	NHDF-Ad	bronchial
48	chr6:35805400-35823800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr6:35806200-35815200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:35806200-35816200	Weak transcription	Left Ventricle	heart

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