Variant report

Variant	rs9348984
Chromosome Location	chr6:35920002-35920003
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35911809..35913837-chr6:35917616..35920298,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2237095	1.00[CEU][hapmap]
rs2766597	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2815805	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2817017	1.00[CEU][hapmap]
rs2859144	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs584884	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs612049	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6457861	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6908372	1.00[CEU][hapmap]
rs7750653	1.00[CEU][hapmap]
rs7768956	1.00[CEU][hapmap]
rs7770710	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7774786	1.00[CEU][hapmap]
rs7774934	1.00[CEU][hapmap]
rs9368896	1.00[AMR][1000 genomes]
rs9462126	1.00[EUR][1000 genomes]
rs9462156	1.00[CEU][hapmap]
rs9470207	1.00[CEU][hapmap]
rs9470217	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv2234050	chr6:35920002-35920003	Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35890400-35930200	Weak transcription	Pancreas	Pancrea
2	chr6:35910200-35930200	Weak transcription	Spleen	Spleen
3	chr6:35912000-35926400	Weak transcription	Right Atrium	heart
4	chr6:35916200-35932000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:35919000-35920600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:35919600-35920200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:35919600-35920400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:35919600-35920400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:35919600-35920600	Enhancers	HUVEC	blood vessel
10	chr6:35919600-35921200	Enhancers	HepG2	liver
11	chr6:35919800-35920200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:35919800-35920200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:35919800-35920200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:35919800-35920200	Enhancers	NH-A	brain
15	chr6:35919800-35920400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:35919800-35920400	Enhancers	A549	lung
17	chr6:35919800-35920400	Enhancers	Hela-S3	cervix
18	chr6:35919800-35920400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr6:35919800-35920400	Enhancers	NHEK	skin
20	chr6:35919800-35920600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:35919800-35920600	Enhancers	NHDF-Ad	bronchial
22	chr6:35919800-35922000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:35919800-35923600	Enhancers	HMEC	breast
24	chr6:35920000-35920200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:35920000-35920400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:35920000-35920400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr6:35920000-35920400	Enhancers	Dnd41	blood
28	chr6:35920000-35920600	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr6:35920000-35920600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:35920000-35921200	Enhancers	GM12878-XiMat	blood

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