Variant report

Variant	rs6908372
Chromosome Location	chr6:36030248-36030249
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35996207..35998463-chr6:36028825..36030932,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2237095	1.00[CEU][hapmap]
rs2815805	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2859144	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs584884	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs612049	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7750653	1.00[CEU][hapmap]
rs7768956	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7770710	1.00[CEU][hapmap]
rs7774786	1.00[CEU][hapmap]
rs7774934	1.00[CEU][hapmap]
rs9348984	1.00[CEU][hapmap]
rs9462156	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs9470207	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9470217	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36006400-36039800	Weak transcription	Esophagus	oesophagus
2	chr6:36018200-36050000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:36019400-36032600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:36019800-36031600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:36020000-36033800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr6:36020400-36032600	Weak transcription	Right Atrium	heart
7	chr6:36020400-36033000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:36020400-36047400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:36021600-36033200	Weak transcription	Fetal Brain Male	brain
10	chr6:36022000-36032200	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:36023000-36032200	Weak transcription	Small Intestine	intestine
13	chr6:36023000-36047400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:36024000-36030600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:36024200-36033800	Strong transcription	Primary B cells from cord blood	blood
16	chr6:36025400-36030400	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:36026200-36030600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:36026200-36032400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:36026200-36032600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:36026400-36030600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:36026400-36031400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:36026400-36031600	Strong transcription	Dnd41	blood
23	chr6:36026400-36032800	Strong transcription	Fetal Thymus	thymus
24	chr6:36026600-36031000	Strong transcription	Fetal Muscle Trunk	muscle
25	chr6:36026600-36031400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:36027000-36030400	Strong transcription	Fetal Intestine Large	intestine
27	chr6:36027000-36030800	Strong transcription	Hela-S3	cervix
28	chr6:36027000-36031000	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr6:36027000-36031200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:36027000-36031200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:36027200-36030800	Strong transcription	Liver	Liver
32	chr6:36027200-36031000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:36027200-36031000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr6:36027200-36031200	Strong transcription	NHDF-Ad	bronchial
35	chr6:36027200-36031600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:36027400-36030400	Strong transcription	GM12878-XiMat	blood
37	chr6:36027400-36030800	Strong transcription	Primary T cells from cord blood	blood
38	chr6:36027400-36030800	Strong transcription	Fetal Muscle Leg	muscle
39	chr6:36028000-36030800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr6:36028000-36031200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr6:36028000-36031600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:36028000-36032800	Weak transcription	Ovary	ovary
43	chr6:36028000-36032800	Weak transcription	Right Ventricle	heart
44	chr6:36028200-36032400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:36028200-36032400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:36028200-36032600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:36028200-36032600	Weak transcription	Brain Substantia Nigra	brain
48	chr6:36028200-36032600	Weak transcription	Fetal Kidney	kidney
49	chr6:36028200-36032600	Weak transcription	Left Ventricle	heart
50	chr6:36028200-36032600	Weak transcription	Pancreas	Pancrea

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