Variant report

Variant	rs7770710
Chromosome Location	chr6:36022757-36022758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36022330..36025073-chr6:36163563..36165903,2	MCF-7	breast:
2	chr6:36000250..36001867-chr6:36022118..36025026,2	K562	blood:
3	chr6:36020440..36023292-chr6:36035204..36037797,2	K562	blood:
4	chr6:36004256..36008488-chr6:36021572..36023371,4	K562	blood:
5	chr6:36019349..36024573-chr6:36034890..36038920,5	K562	blood:
6	chr6:36006492..36008488-chr6:36021459..36023268,2	K562	blood:
7	chr6:36017368..36019921-chr6:36022129..36025655,3	K562	blood:
8	chr6:36022269..36026633-chr6:36027844..36030184,4	K562	blood:
9	chr6:36021411..36023940-chr6:36044736..36047636,2	K562	blood:
10	chr6:36016800..36019592-chr6:36020549..36024503,3	MCF-7	breast:
11	chr6:35996936..35998552-chr6:36020582..36023178,2	K562	blood:
12	chr6:36014769..36017173-chr6:36021904..36023808,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000096070	Chromatin interaction
ENSG00000246982	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1100858	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs2237095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815805	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2859144	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3761978	0.86[JPT][hapmap]
rs584884	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs58604706	1.00[EUR][1000 genomes]
rs596446	1.00[EUR][1000 genomes]
rs603869	1.00[EUR][1000 genomes]
rs611846	1.00[EUR][1000 genomes]
rs612049	0.83[ASW][hapmap];1.00[CEU][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs61764190	1.00[EUR][1000 genomes]
rs620491	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620493	1.00[EUR][1000 genomes]
rs626386	1.00[EUR][1000 genomes]
rs686431	1.00[EUR][1000 genomes]
rs6908372	1.00[CEU][hapmap]
rs6940239	1.00[EUR][1000 genomes]
rs73409871	1.00[ASN][1000 genomes]
rs73409872	1.00[ASN][1000 genomes]
rs7742178	1.00[EUR][1000 genomes]
rs7750653	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7753664	1.00[JPT][hapmap]
rs7762801	1.00[JPT][hapmap]
rs7764721	1.00[EUR][1000 genomes]
rs7768950	1.00[EUR][1000 genomes]
rs7768956	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7774786	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7774934	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9348984	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs9462156	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs9462157	1.00[EUR][1000 genomes]
rs9470200	1.00[EUR][1000 genomes]
rs9470207	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9470217	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35999000-36027600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:36000600-36027400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:36003200-36027200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:36003800-36027600	Weak transcription	Colonic Mucosa	Colon
5	chr6:36006400-36039800	Weak transcription	Esophagus	oesophagus
6	chr6:36007400-36027200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:36008600-36027600	Weak transcription	Brain Substantia Nigra	brain
8	chr6:36016800-36024200	Enhancers	Colon Smooth Muscle	Colon
9	chr6:36017800-36029400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:36018200-36027200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:36018200-36050000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:36018600-36026200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:36018600-36027200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:36018800-36027400	Weak transcription	NHEK	skin
15	chr6:36019000-36022800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:36019000-36027600	Weak transcription	Brain Germinal Matrix	brain
17	chr6:36019200-36023000	Strong transcription	HSMM	muscle
18	chr6:36019200-36024000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:36019400-36024600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr6:36019400-36026400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:36019400-36026400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:36019400-36026400	Weak transcription	Fetal Intestine Small	intestine
23	chr6:36019400-36027000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:36019400-36027200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:36019400-36027200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:36019400-36032600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:36019600-36024800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:36019600-36027000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:36019600-36027400	Weak transcription	Pancreas	Pancrea
30	chr6:36019600-36027400	Weak transcription	Right Ventricle	heart
31	chr6:36019600-36027600	Weak transcription	Gastric	stomach
32	chr6:36019800-36024600	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr6:36019800-36031600	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr6:36020000-36023200	Strong transcription	Primary T cells from cord blood	blood
35	chr6:36020000-36023200	Strong transcription	Dnd41	blood
36	chr6:36020000-36023200	Strong transcription	GM12878-XiMat	blood
37	chr6:36020000-36024400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:36020000-36027200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:36020000-36027200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:36020000-36027400	Weak transcription	Spleen	Spleen
41	chr6:36020000-36027600	Weak transcription	A549	lung
42	chr6:36020000-36033800	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr6:36020200-36022800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr6:36020200-36024800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:36020200-36026600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr6:36020200-36027600	Weak transcription	NHLF	lung
47	chr6:36020400-36023000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:36020400-36023000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:36020400-36023000	Strong transcription	NHDF-Ad	bronchial
50	chr6:36020400-36023200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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