Variant report

Variant	rs61764190
Chromosome Location	chr6:36044121-36044122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35994000..35997973-chr6:36041645..36047090,8	K562	blood:
2	chr6:36043088..36045724-chr6:36059289..36061896,2	MCF-7	breast:
3	chr6:36043948..36046768-chr6:36065165..36067634,2	K562	blood:
4	chr6:35992919..35998420-chr6:36043527..36047632,6	K562	blood:
5	chr6:35994813..35995763-chr6:36043484..36044201,2	K562	blood:
6	chr6:36037602..36039878-chr6:36044052..36046238,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237719	Chromatin interaction
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2237095	1.00[EUR][1000 genomes]
rs2815805	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2859144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs584884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58604706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs596446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs603869	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs611846	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs612049	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs620491	1.00[EUR][1000 genomes]
rs620493	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626386	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs686431	1.00[EUR][1000 genomes]
rs6940239	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7742178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768950	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768956	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7770710	1.00[EUR][1000 genomes]
rs7774786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462157	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470200	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470217	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36018200-36050000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:36020400-36047400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:36023000-36047400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:36028200-36046000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:36028200-36046600	Weak transcription	Fetal Stomach	stomach
7	chr6:36028200-36047200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:36028200-36047800	Weak transcription	Brain Germinal Matrix	brain
9	chr6:36028200-36048400	Weak transcription	Fetal Brain Female	brain
10	chr6:36028400-36047400	Weak transcription	Colonic Mucosa	Colon
11	chr6:36028400-36047800	Weak transcription	Lung	lung
12	chr6:36028600-36046600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:36028600-36050200	Weak transcription	Spleen	Spleen
14	chr6:36029200-36048000	Weak transcription	NH-A	brain
15	chr6:36029600-36047600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:36033000-36046600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:36033200-36046800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:36033400-36044200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:36033400-36045600	Weak transcription	Left Ventricle	heart
20	chr6:36033400-36045600	Weak transcription	Pancreas	Pancrea
21	chr6:36033400-36045600	Weak transcription	Thymus	Thymus
22	chr6:36033400-36047800	Weak transcription	Gastric	stomach
23	chr6:36033400-36048000	Weak transcription	Fetal Brain Male	brain
24	chr6:36033400-36050200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:36033600-36048000	Weak transcription	Ovary	ovary
26	chr6:36034400-36048000	Weak transcription	Fetal Kidney	kidney
27	chr6:36034400-36048000	Weak transcription	HSMMtube	muscle
28	chr6:36035000-36044600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr6:36035400-36045600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:36035400-36049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:36035400-36050200	Weak transcription	NHLF	lung
32	chr6:36035600-36044600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr6:36035600-36046200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:36035600-36047200	Weak transcription	Brain Angular Gyrus	brain
35	chr6:36035600-36048000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr6:36035800-36050000	Weak transcription	Aorta	Aorta
37	chr6:36036000-36047400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:36036200-36045600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:36036200-36047800	Weak transcription	Right Ventricle	heart
40	chr6:36036200-36048000	Weak transcription	A549	lung
41	chr6:36036200-36050000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:36036200-36050000	Weak transcription	Psoas Muscle	Psoas
43	chr6:36036400-36044600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr6:36036600-36045600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:36036600-36048000	Weak transcription	Fetal Heart	heart
46	chr6:36037200-36048000	Weak transcription	Brain Anterior Caudate	brain
47	chr6:36037200-36050400	Weak transcription	Brain Substantia Nigra	brain
48	chr6:36037400-36044200	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:36038400-36050000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:36039800-36047400	Weak transcription	H1 Cell Line	embryonic stem cell

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