Variant report

Variant	rs686431
Chromosome Location	chr6:35974217-35974218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2237095	1.00[EUR][1000 genomes]
rs2815805	1.00[EUR][1000 genomes]
rs2859144	1.00[EUR][1000 genomes]
rs584884	1.00[EUR][1000 genomes]
rs58604706	1.00[EUR][1000 genomes]
rs596446	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs603869	1.00[EUR][1000 genomes]
rs611846	1.00[EUR][1000 genomes]
rs612049	1.00[EUR][1000 genomes]
rs61764190	1.00[EUR][1000 genomes]
rs620491	1.00[EUR][1000 genomes]
rs620493	1.00[EUR][1000 genomes]
rs626386	1.00[EUR][1000 genomes]
rs6940239	1.00[EUR][1000 genomes]
rs7742178	1.00[EUR][1000 genomes]
rs7750653	1.00[EUR][1000 genomes]
rs7764721	1.00[EUR][1000 genomes]
rs7768950	1.00[EUR][1000 genomes]
rs7768956	1.00[EUR][1000 genomes]
rs7770710	1.00[EUR][1000 genomes]
rs7774786	1.00[EUR][1000 genomes]
rs7774934	1.00[EUR][1000 genomes]
rs9462156	1.00[EUR][1000 genomes]
rs9462157	1.00[EUR][1000 genomes]
rs9470200	1.00[EUR][1000 genomes]
rs9470207	1.00[EUR][1000 genomes]
rs9470217	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35964800-35991800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35966000-35976000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:35968400-35982000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:35972800-35976600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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