Variant report

Variant	rs9462156
Chromosome Location	chr6:36064442-36064443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35991723..36001946-chr6:36059635..36067870,13	K562	blood:
2	chr6:35991723..35998793-chr6:36060568..36068863,14	K562	blood:
3	chr6:35993804..35995388-chr6:36064121..36065946,2	MCF-7	breast:
4	chr6:36057741..36060174-chr6:36061007..36064556,3	MCF-7	breast:
5	chr6:36005324..36007275-chr6:36062983..36064976,2	K562	blood:
6	chr6:36048961..36051404-chr6:36063469..36066114,2	K562	blood:

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction
ENSG00000112053	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2237095	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs2815805	1.00[CEU][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2859144	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs584884	1.00[CEU][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58604706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs596446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs603869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs611846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs612049	1.00[CEU][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61764190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs620491	1.00[EUR][1000 genomes]
rs620493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs686431	1.00[EUR][1000 genomes]
rs6908372	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs6940239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7742178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750653	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768956	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7770710	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs7774786	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774934	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9348984	1.00[CEU][hapmap]
rs9462157	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470207	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470217	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36051600-36067600	Weak transcription	Brain Substantia Nigra	brain
3	chr6:36051600-36088800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:36051800-36070600	Weak transcription	Pancreas	Pancrea
5	chr6:36051800-36070600	Weak transcription	Psoas Muscle	Psoas
6	chr6:36051800-36070800	Weak transcription	Aorta	Aorta
7	chr6:36051800-36075800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:36052000-36070600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:36052000-36070600	Weak transcription	Brain Angular Gyrus	brain
10	chr6:36052000-36070600	Weak transcription	NHLF	lung
11	chr6:36052000-36070800	Weak transcription	Esophagus	oesophagus
12	chr6:36052000-36075200	Weak transcription	Right Ventricle	heart
13	chr6:36052200-36067400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:36052200-36070600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:36052200-36070800	Weak transcription	Gastric	stomach
16	chr6:36052200-36071400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:36060200-36075000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:36060600-36070600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:36060600-36071400	Weak transcription	Fetal Brain Female	brain
20	chr6:36060600-36080800	Weak transcription	Ovary	ovary
21	chr6:36060800-36067800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:36060800-36072000	Weak transcription	Brain Germinal Matrix	brain
23	chr6:36061200-36068600	Weak transcription	Fetal Stomach	stomach
24	chr6:36062000-36065400	Enhancers	Stomach Mucosa	stomach
25	chr6:36062000-36065600	Enhancers	Fetal Intestine Large	intestine
26	chr6:36062400-36068000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:36062800-36064600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:36062800-36066400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:36063000-36065000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:36063000-36065200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:36063000-36066000	Strong transcription	HSMM	muscle
32	chr6:36063000-36066600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr6:36063000-36066600	Weak transcription	Fetal Heart	heart
34	chr6:36063000-36074800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:36063200-36064600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:36063200-36069000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:36063200-36070400	Weak transcription	Fetal Kidney	kidney
38	chr6:36063200-36080600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:36063400-36064600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
40	chr6:36063400-36065000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:36063400-36065000	Strong transcription	Fetal Muscle Leg	muscle
42	chr6:36063400-36065000	Strong transcription	Left Ventricle	heart
43	chr6:36063400-36065200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr6:36063400-36065200	Strong transcription	GM12878-XiMat	blood
45	chr6:36063400-36065200	Strong transcription	Hela-S3	cervix
46	chr6:36063400-36065400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:36063400-36065400	Strong transcription	Dnd41	blood
48	chr6:36063400-36065400	Strong transcription	Osteobl	bone
49	chr6:36063400-36065600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:36063400-36065600	Strong transcription	Adipose Nuclei	Adipose

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