Variant report

Variant	rs2237095
Chromosome Location	chr6:36008039-36008040
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35995194..35998195-chr6:36005882..36008273,3	MCF-7	breast:
2	chr6:36004256..36008488-chr6:36021572..36023371,4	K562	blood:
3	chr6:36006492..36008488-chr6:36021459..36023268,2	K562	blood:
4	chr6:36007067..36009357-chr6:36013224..36016098,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1100858	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs2815805	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2859144	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3761978	0.86[JPT][hapmap]
rs584884	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs58604706	1.00[EUR][1000 genomes]
rs596446	1.00[EUR][1000 genomes]
rs603869	1.00[EUR][1000 genomes]
rs611846	1.00[EUR][1000 genomes]
rs612049	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs61764190	1.00[EUR][1000 genomes]
rs620491	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620493	1.00[EUR][1000 genomes]
rs626386	1.00[EUR][1000 genomes]
rs6457861	1.00[CEU][hapmap]
rs686431	1.00[EUR][1000 genomes]
rs6908372	1.00[CEU][hapmap]
rs6940239	1.00[EUR][1000 genomes]
rs73409871	1.00[ASN][1000 genomes]
rs73409872	1.00[ASN][1000 genomes]
rs7742178	1.00[EUR][1000 genomes]
rs7750653	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7753664	1.00[JPT][hapmap]
rs7762801	1.00[JPT][hapmap]
rs7764721	1.00[EUR][1000 genomes]
rs7768950	1.00[EUR][1000 genomes]
rs7768956	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7770710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774786	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7774934	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9348984	1.00[CEU][hapmap]
rs9462156	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs9462157	1.00[EUR][1000 genomes]
rs9470200	1.00[EUR][1000 genomes]
rs9470207	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9470217	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35997600-36008800	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr6:35997600-36010800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr6:35997600-36021800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:35998000-36019200	Weak transcription	HSMM	muscle
5	chr6:35998200-36018400	Weak transcription	NHLF	lung
6	chr6:35998200-36018600	Weak transcription	NHDF-Ad	bronchial
7	chr6:35998800-36008800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:35999000-36027600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:36000600-36009800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:36000600-36020400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:36000600-36027400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:36000800-36009200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:36003200-36027200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:36003800-36014600	Weak transcription	Gastric	stomach
15	chr6:36003800-36027600	Weak transcription	Colonic Mucosa	Colon
16	chr6:36004800-36008600	Enhancers	Primary T cells from cord blood	blood
17	chr6:36005000-36008800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:36005000-36008800	Enhancers	Colon Smooth Muscle	Colon
19	chr6:36005000-36009200	Enhancers	HepG2	liver
20	chr6:36005000-36009400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr6:36005000-36010200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:36005200-36008600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:36005200-36008800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:36005200-36008800	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr6:36005200-36009400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr6:36005400-36008600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:36005400-36008600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:36005400-36020400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:36005800-36008800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:36005800-36009000	Enhancers	NHEK	skin
31	chr6:36006000-36008600	Enhancers	HMEC	breast
32	chr6:36006000-36009400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr6:36006200-36010600	Weak transcription	Lung	lung
34	chr6:36006200-36013400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:36006200-36017800	Weak transcription	Hela-S3	cervix
36	chr6:36006200-36019200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:36006400-36009200	Enhancers	Primary hematopoietic stem cells	blood
38	chr6:36006400-36010200	Weak transcription	Pancreas	Pancrea
39	chr6:36006400-36010200	Weak transcription	Spleen	Spleen
40	chr6:36006400-36019200	Weak transcription	Right Ventricle	heart
41	chr6:36006400-36039800	Weak transcription	Esophagus	oesophagus
42	chr6:36006600-36008400	Enhancers	Rectal Smooth Muscle	rectum
43	chr6:36006600-36010400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr6:36006600-36010400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:36006600-36010800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:36006600-36011400	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr6:36006600-36016200	Weak transcription	Thymus	Thymus
48	chr6:36006600-36016400	Weak transcription	Primary B cells from peripheral blood	blood
49	chr6:36006600-36016400	Weak transcription	Right Atrium	heart
50	chr6:36006600-36018200	Weak transcription	Fetal Thymus	thymus

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