Variant report

Variant	rs3761978
Chromosome Location	chr6:36095755-36095756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:36095238-36095782	K562	blood:	n/a	n/a
2	NR2F2	chr6:36094891-36096069	K562	blood:	n/a	n/a
3	GATA2	chr6:36095145-36095767	HUVEC	blood vessel:	n/a	chr6:36095489-36095499
4	FOS	chr6:36094630-36095786	HUVEC	blood vessel:	n/a	chr6:36095483-36095493 chr6:36095484-36095492 chr6:36095482-36095493
5	CEBPB	chr6:36095217-36095840	HCT-116	colon:	n/a	n/a
6	HEY1	chr6:36095184-36095835	HepG2	liver:	n/a	n/a
7	MAX	chr6:36095233-36095835	K562	blood:	n/a	n/a
8	CBX3	chr6:36094596-36096239	K562	blood:	n/a	n/a
9	POLR2A	chr6:36095074-36095801	HUVEC	blood vessel:	n/a	n/a
10	RCOR1	chr6:36095423-36095909	HepG2	liver:	n/a	n/a
11	FOSL2	chr6:36095212-36095772	HepG2	liver:	n/a	chr6:36095483-36095493 chr6:36095483-36095494 chr6:36095484-36095492
12	POLR2A	chr6:36093390-36096743	HepG2	liver:	n/a	n/a
13	POLR2A	chr6:36095178-36095811	Hela-S3	cervix:	n/a	n/a
14	MAZ	chr6:36095261-36095835	Hela-S3	cervix:	n/a	n/a
15	MYBL2	chr6:36095058-36095787	HepG2	liver:	n/a	n/a
16	FOSL2	chr6:36094634-36095764	SK-N-SH	brain:	n/a	chr6:36095483-36095493 chr6:36095483-36095494 chr6:36095484-36095492
17	SMARCC1	chr6:36094795-36095908	Hela-S3	cervix:	n/a	chr6:36095484-36095493
18	EP300	chr6:36095079-36095841	SK-N-SH	brain:	n/a	n/a
19	POLR2A	chr6:36095259-36096014	Hela-S3	cervix:	n/a	n/a
20	JUN	chr6:36094377-36096271	K562	blood:	n/a	chr6:36095483-36095493 chr6:36095484-36095492 chr6:36095852-36095863
21	MAZ	chr6:36094241-36096057	IMR90	lung:	n/a	n/a
22	FOSL2	chr6:36095256-36095775	HepG2	liver:	n/a	chr6:36095483-36095493 chr6:36095483-36095494 chr6:36095484-36095492

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36083240..36096353-chr6:36161490..36168411,30	MCF-7	breast:
2	chr6:36093292..36096677-chr6:36162699..36165787,6	K562	blood:

Variant related genes	Relation type
MAPK13	TF binding region
ENSG00000096070	Chromatin interaction
ENSG00000246982	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2237095	0.86[JPT][hapmap]
rs7753664	0.86[JPT][hapmap]
rs7762801	0.86[JPT][hapmap]
rs7770710	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36077200-36096600	Weak transcription	Fetal Brain Female	brain
2	chr6:36077400-36096400	Weak transcription	Fetal Brain Male	brain
3	chr6:36084600-36097600	Weak transcription	Fetal Heart	heart
4	chr6:36086600-36098000	Weak transcription	Aorta	Aorta
5	chr6:36088800-36096800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:36089000-36097800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:36089200-36097600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:36089400-36095800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:36089400-36096200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:36089400-36097800	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:36089600-36097800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:36091800-36096200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr6:36091800-36096800	Weak transcription	GM12878-XiMat	blood
14	chr6:36091800-36097800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:36091800-36097800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:36091800-36097800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:36091800-36097800	Weak transcription	Right Atrium	heart
18	chr6:36091800-36098000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:36092200-36097600	Weak transcription	Pancreas	Pancrea
20	chr6:36092200-36097600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:36092200-36097800	Weak transcription	Liver	Liver
22	chr6:36092400-36097600	Weak transcription	Colonic Mucosa	Colon
23	chr6:36093400-36096200	Enhancers	Spleen	Spleen
24	chr6:36093400-36097600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:36093600-36096400	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr6:36093800-36095800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:36093800-36096800	Enhancers	HUVEC	blood vessel
28	chr6:36093800-36097000	Enhancers	Lung	lung
29	chr6:36093800-36097800	Enhancers	NHDF-Ad	bronchial
30	chr6:36094000-36096400	Enhancers	NHLF	lung
31	chr6:36094000-36096600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:36094000-36096600	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr6:36094200-36095800	Enhancers	Right Ventricle	heart
34	chr6:36094400-36095800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:36094400-36095800	Enhancers	Primary B cells from cord blood	blood
36	chr6:36094400-36096200	Enhancers	Osteobl	bone
37	chr6:36094400-36096400	Enhancers	K562	blood
38	chr6:36094400-36096800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:36094400-36097600	Enhancers	Fetal Intestine Small	intestine
40	chr6:36094600-36095800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:36094600-36095800	Enhancers	HMEC	breast
42	chr6:36094600-36096000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:36094600-36096000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:36094600-36096000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:36094600-36096000	Enhancers	Placenta	Placenta
46	chr6:36094600-36096000	Enhancers	A549	lung
47	chr6:36094600-36096200	Enhancers	HSMM	muscle
48	chr6:36094600-36096800	Flanking Active TSS	HepG2	liver
49	chr6:36094800-36095800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:36094800-36095800	Enhancers	Adipose Nuclei	Adipose

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