Variant report

Variant	rs73409871
Chromosome Location	chr6:36066643-36066644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35991723..36001946-chr6:36059635..36067870,13	K562	blood:
2	chr6:36066609..36068924-chr6:36070990..36074057,3	MCF-7	breast:
3	chr6:35991723..35998793-chr6:36060568..36068863,14	K562	blood:
4	chr6:35887410..35889651-chr6:36065057..36068418,3	K562	blood:
5	chr6:36065903..36068557-chr6:36084761..36087937,3	K562	blood:
6	chr6:36060107..36064310-chr6:36065297..36067978,4	K562	blood:
7	chr6:36066518..36068838-chr6:36089784..36091696,2	K562	blood:
8	chr6:36066380..36072646-chr6:36077457..36080962,6	K562	blood:
9	chr6:36066427..36068947-chr6:36162113..36167287,5	K562	blood:
10	chr6:36066481..36068248-chr6:36163187..36164790,2	MCF-7	breast:
11	chr6:36043948..36046768-chr6:36065165..36067634,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction
ENSG00000246982	Chromatin interaction
ENSG00000096063	Chromatin interaction
ENSG00000237719	Chromatin interaction
ENSG00000112053	Chromatin interaction
ENSG00000096070	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1100858	0.95[ASN][1000 genomes]
rs2237095	1.00[ASN][1000 genomes]
rs620491	1.00[ASN][1000 genomes]
rs73409872	1.00[ASN][1000 genomes]
rs7770710	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36051600-36067600	Weak transcription	Brain Substantia Nigra	brain
3	chr6:36051600-36088800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:36051800-36070600	Weak transcription	Pancreas	Pancrea
5	chr6:36051800-36070600	Weak transcription	Psoas Muscle	Psoas
6	chr6:36051800-36070800	Weak transcription	Aorta	Aorta
7	chr6:36051800-36075800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:36052000-36070600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:36052000-36070600	Weak transcription	Brain Angular Gyrus	brain
10	chr6:36052000-36070600	Weak transcription	NHLF	lung
11	chr6:36052000-36070800	Weak transcription	Esophagus	oesophagus
12	chr6:36052000-36075200	Weak transcription	Right Ventricle	heart
13	chr6:36052200-36067400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:36052200-36070600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:36052200-36070800	Weak transcription	Gastric	stomach
16	chr6:36052200-36071400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:36060200-36075000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:36060600-36070600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:36060600-36071400	Weak transcription	Fetal Brain Female	brain
20	chr6:36060600-36080800	Weak transcription	Ovary	ovary
21	chr6:36060800-36067800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:36060800-36072000	Weak transcription	Brain Germinal Matrix	brain
23	chr6:36061200-36068600	Weak transcription	Fetal Stomach	stomach
24	chr6:36062400-36068000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:36063000-36074800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:36063200-36069000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:36063200-36070400	Weak transcription	Fetal Kidney	kidney
28	chr6:36063200-36080600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:36063400-36067600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr6:36063400-36069200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:36063400-36070200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:36063400-36071400	Weak transcription	Fetal Brain Male	brain
33	chr6:36063400-36080600	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr6:36063600-36066800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr6:36063600-36067200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:36063600-36067600	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:36063600-36070200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:36063600-36070400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:36063600-36080800	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:36063800-36068000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr6:36063800-36071000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:36064000-36067000	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:36064200-36068000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:36064200-36068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:36064400-36070000	Weak transcription	NHEK	skin
46	chr6:36064400-36070800	Weak transcription	Lung	lung
47	chr6:36064600-36068400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:36064600-36069200	Genic enhancers	Fetal Intestine Small	intestine
49	chr6:36064600-36076000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:36064800-36070400	Weak transcription	Brain Anterior Caudate	brain

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