Variant report

Variant	rs9470207
Chromosome Location	chr6:36009953-36009954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36008403..36010150-chr6:36012606..36014695,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs2237095	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2815805	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2859144	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs584884	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58604706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs596446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs603869	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs611846	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs612049	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61764190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs620491	1.00[EUR][1000 genomes]
rs620493	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626386	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6457861	1.00[CEU][hapmap]
rs686431	1.00[EUR][1000 genomes]
rs6908372	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6940239	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7742178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750653	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768950	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768956	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7770710	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7774786	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774934	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9348984	1.00[CEU][hapmap]
rs9462156	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462157	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9470200	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470217	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35997600-36010800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr6:35997600-36021800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:35998000-36019200	Weak transcription	HSMM	muscle
4	chr6:35998200-36018400	Weak transcription	NHLF	lung
5	chr6:35998200-36018600	Weak transcription	NHDF-Ad	bronchial
6	chr6:35999000-36027600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:36000600-36020400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:36000600-36027400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:36003200-36027200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:36003800-36014600	Weak transcription	Gastric	stomach
11	chr6:36003800-36027600	Weak transcription	Colonic Mucosa	Colon
12	chr6:36005000-36010200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:36005400-36020400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:36006200-36010600	Weak transcription	Lung	lung
15	chr6:36006200-36013400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:36006200-36017800	Weak transcription	Hela-S3	cervix
17	chr6:36006200-36019200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:36006400-36010200	Weak transcription	Pancreas	Pancrea
19	chr6:36006400-36010200	Weak transcription	Spleen	Spleen
20	chr6:36006400-36019200	Weak transcription	Right Ventricle	heart
21	chr6:36006400-36039800	Weak transcription	Esophagus	oesophagus
22	chr6:36006600-36010400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:36006600-36010400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:36006600-36010800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:36006600-36011400	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:36006600-36016200	Weak transcription	Thymus	Thymus
27	chr6:36006600-36016400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr6:36006600-36016400	Weak transcription	Right Atrium	heart
29	chr6:36006600-36018200	Weak transcription	Fetal Thymus	thymus
30	chr6:36006600-36019200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:36006600-36020000	Weak transcription	Dnd41	blood
32	chr6:36006800-36010000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr6:36006800-36010400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:36006800-36011800	Weak transcription	Osteobl	bone
35	chr6:36007000-36017000	Weak transcription	GM12878-XiMat	blood
36	chr6:36007200-36012200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:36007200-36014600	Weak transcription	K562	blood
38	chr6:36007200-36016800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:36007200-36017400	Weak transcription	Primary B cells from cord blood	blood
40	chr6:36007200-36018200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:36007200-36021600	Weak transcription	Brain Anterior Caudate	brain
42	chr6:36007400-36010400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:36007400-36010400	Weak transcription	Fetal Intestine Small	intestine
44	chr6:36007400-36012200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:36007400-36012600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr6:36007400-36012600	Weak transcription	Fetal Heart	heart
47	chr6:36007400-36017400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:36007400-36019200	Weak transcription	Fetal Lung	lung
49	chr6:36007400-36019400	Weak transcription	Fetal Stomach	stomach
50	chr6:36007400-36021800	Weak transcription	Brain Hippocampus Middle	brain

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