Variant report

Variant	rs7750653
Chromosome Location	chr6:36027397-36027398
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36027000..36029241-chr6:36033953..36035939,2	K562	blood:
2	chr6:36026222..36029241-chr6:36033953..36037841,5	K562	blood:
3	chr6:35995175..35997907-chr6:36024774..36027631,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2237095	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2815805	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2859144	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs584884	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58604706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs596446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs603869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs611846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs612049	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61764190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs620491	1.00[EUR][1000 genomes]
rs620493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs686431	1.00[EUR][1000 genomes]
rs6908372	1.00[CEU][hapmap]
rs6940239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7742178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768956	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7770710	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7774786	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774934	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9348984	1.00[CEU][hapmap]
rs9462156	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9462157	1.00[EUR][1000 genomes]
rs9470200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470207	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470217	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35999000-36027600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:36000600-36027400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:36003800-36027600	Weak transcription	Colonic Mucosa	Colon
4	chr6:36006400-36039800	Weak transcription	Esophagus	oesophagus
5	chr6:36008600-36027600	Weak transcription	Brain Substantia Nigra	brain
6	chr6:36017800-36029400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:36018200-36050000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:36018800-36027400	Weak transcription	NHEK	skin
9	chr6:36019000-36027600	Weak transcription	Brain Germinal Matrix	brain
10	chr6:36019400-36032600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:36019600-36027400	Weak transcription	Pancreas	Pancrea
12	chr6:36019600-36027400	Weak transcription	Right Ventricle	heart
13	chr6:36019600-36027600	Weak transcription	Gastric	stomach
14	chr6:36019800-36031600	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr6:36020000-36027400	Weak transcription	Spleen	Spleen
16	chr6:36020000-36027600	Weak transcription	A549	lung
17	chr6:36020000-36033800	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr6:36020200-36027600	Weak transcription	NHLF	lung
19	chr6:36020400-36032600	Weak transcription	Right Atrium	heart
20	chr6:36020400-36033000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:36020400-36047400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:36020800-36029200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:36021200-36027400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:36021600-36033200	Weak transcription	Fetal Brain Male	brain
25	chr6:36022000-36032200	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr6:36022200-36027400	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:36022200-36027400	Weak transcription	Lung	lung
29	chr6:36022400-36029400	Weak transcription	HUVEC	blood vessel
30	chr6:36022600-36027800	Weak transcription	Stomach Mucosa	stomach
31	chr6:36022800-36027600	Weak transcription	NH-A	brain
32	chr6:36023000-36027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:36023000-36027400	Weak transcription	Aorta	Aorta
34	chr6:36023000-36027400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr6:36023000-36027600	Weak transcription	Brain Angular Gyrus	brain
36	chr6:36023000-36027600	Weak transcription	HSMMtube	muscle
37	chr6:36023000-36032200	Weak transcription	Small Intestine	intestine
38	chr6:36023000-36047400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:36023200-36027400	Weak transcription	Primary T cells from cord blood	blood
40	chr6:36023200-36027400	Weak transcription	Ovary	ovary
41	chr6:36023200-36027400	Weak transcription	GM12878-XiMat	blood
42	chr6:36023200-36027600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr6:36023400-36027800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:36023600-36027600	Weak transcription	Left Ventricle	heart
45	chr6:36023800-36030000	Strong transcription	Primary hematopoietic stem cells	blood
46	chr6:36024000-36030600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:36024200-36029200	Weak transcription	Fetal Heart	heart
48	chr6:36024200-36033800	Strong transcription	Primary B cells from cord blood	blood
49	chr6:36025400-36030400	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:36025600-36027800	Weak transcription	Fetal Kidney	kidney

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