Variant report

Variant	rs9470440
Chromosome Location	chr6:36907594-36907595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10947649	0.88[CHB][hapmap];0.85[CHD][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap]
rs11757380	0.81[CHB][hapmap]
rs13219894	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs13219913	0.90[CEU][hapmap];0.87[CHB][hapmap]
rs3798469	0.94[CHB][hapmap]
rs9462232	0.88[CHB][hapmap]
rs9462234	0.88[CHB][hapmap]
rs9470422	0.88[CHB][hapmap]
rs997674	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9470440	C6orf89	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
2	chr6:36896200-36914200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:36896200-36915400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:36896400-36914200	Weak transcription	Brain Substantia Nigra	brain
5	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
6	chr6:36905000-36908400	Enhancers	Fetal Heart	heart
7	chr6:36906200-36908000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:36906600-36908000	Enhancers	Hela-S3	cervix
9	chr6:36906600-36908800	Enhancers	Fetal Thymus	thymus
10	chr6:36906600-36908800	Enhancers	Thymus	Thymus
11	chr6:36907200-36907600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:36907400-36908200	Enhancers	Brain Hippocampus Middle	brain
13	chr6:36907400-36908600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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