Variant report

Variant	rs9462234
Chromosome Location	chr6:36845866-36845867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36844707..36849057-chr6:36849516..36855847,7	K562	blood:
2	chr6:36844782..36847155-chr6:36952740..36955227,2	K562	blood:
3	chr6:36841338..36845965-chr6:36851992..36855231,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198663	Chromatin interaction
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1008027	0.82[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947638	0.85[ASN][1000 genomes]
rs10947639	0.85[ASN][1000 genomes]
rs10947649	0.88[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs11757380	0.82[CHB][hapmap]
rs11963298	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs11970506	0.83[ASN][1000 genomes]
rs12194154	0.88[ASN][1000 genomes]
rs12213912	0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs13190998	0.97[ASN][1000 genomes]
rs13193599	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13193613	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13219894	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[ASN][1000 genomes]
rs13219913	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13220210	0.96[ASN][1000 genomes]
rs16889199	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2293391	0.84[ASN][1000 genomes]
rs34031451	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34651740	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35168332	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35423793	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3798469	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs61006307	0.96[ASN][1000 genomes]
rs6457961	0.87[ASN][1000 genomes]
rs67540019	0.97[ASN][1000 genomes]
rs6930737	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs729659	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73418121	0.81[ASN][1000 genomes]
rs73418143	0.96[ASN][1000 genomes]
rs9462232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462233	0.93[ASN][1000 genomes]
rs9462235	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462236	0.97[ASN][1000 genomes]
rs9470422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470429	0.97[ASN][1000 genomes]
rs9470440	0.88[CHB][hapmap]
rs9918461	0.84[ASN][1000 genomes]
rs997674	0.94[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36843600-36847400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:36843600-36847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:36843600-36853000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:36843800-36846800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:36843800-36846800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:36843800-36853000	Weak transcription	Osteobl	bone
7	chr6:36844000-36846600	Weak transcription	Fetal Heart	heart
8	chr6:36844200-36846000	Weak transcription	K562	blood

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