Variant report

Variant	rs35423793
Chromosome Location	chr6:36829238-36829239
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36828665..36833827-chr6:36838293..36844932,14	MCF-7	breast:
2	chr6:36821600..36824429-chr6:36828707..36831696,2	MCF-7	breast:
3	chr6:36787597..36789136-chr6:36828345..36830659,2	K562	blood:
4	chr6:36819191..36821393-chr6:36826640..36829329,2	MCF-7	breast:
5	chr6:36824630..36826457-chr6:36826956..36829898,2	K562	blood:
6	chr6:36799434..36803274-chr6:36828928..36832166,3	MCF-7	breast:
7	chr6:36798286..36801016-chr6:36828535..36830113,2	MCF-7	breast:
8	chr6:36645491..36648229-chr6:36828778..36831723,2	MCF-7	breast:
9	chr6:36815094..36818441-chr6:36826786..36830432,3	K562	blood:
10	chr6:36827534..36831660-chr6:36847624..36850020,3	K562	blood:
11	chr6:36824608..36827747-chr6:36828662..36831930,3	MCF-7	breast:
12	chr6:36749421..36751740-chr6:36828729..36831450,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137168	Chromatin interaction
ENSG00000124762	Chromatin interaction
ENSG00000198663	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1008027	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10947638	0.84[ASN][1000 genomes]
rs10947639	0.84[ASN][1000 genomes]
rs10947649	0.83[ASN][1000 genomes]
rs11963298	0.83[ASN][1000 genomes]
rs11970506	0.81[ASN][1000 genomes]
rs12194154	0.86[ASN][1000 genomes]
rs12213912	0.86[ASN][1000 genomes]
rs13190998	0.96[ASN][1000 genomes]
rs13193599	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13193613	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13219894	0.96[ASN][1000 genomes]
rs13219913	0.97[ASN][1000 genomes]
rs13220210	0.97[ASN][1000 genomes]
rs16889199	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2293391	0.82[ASN][1000 genomes]
rs34031451	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34651740	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35168332	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798469	0.96[ASN][1000 genomes]
rs61006307	0.97[ASN][1000 genomes]
rs6457961	0.88[ASN][1000 genomes]
rs67540019	0.95[ASN][1000 genomes]
rs6930737	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs729659	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73418121	0.83[ASN][1000 genomes]
rs73418143	0.97[ASN][1000 genomes]
rs9462232	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9462233	0.91[ASN][1000 genomes]
rs9462234	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9462235	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462236	0.96[ASN][1000 genomes]
rs9470422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470429	0.96[ASN][1000 genomes]
rs9918461	0.83[ASN][1000 genomes]
rs997674	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36817000-36841400	Weak transcription	Colonic Mucosa	Colon
2	chr6:36817200-36830200	Weak transcription	Fetal Lung	lung
3	chr6:36817200-36833400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:36817200-36841200	Weak transcription	Fetal Brain Male	brain
5	chr6:36817200-36842000	Weak transcription	Stomach Mucosa	stomach
6	chr6:36819000-36830000	Weak transcription	Fetal Kidney	kidney
7	chr6:36819000-36840400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:36819400-36834000	Strong transcription	Dnd41	blood
9	chr6:36819400-36841800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:36819600-36833400	Strong transcription	Primary T cells from cord blood	blood
11	chr6:36819800-36839800	Strong transcription	Fetal Thymus	thymus
12	chr6:36821000-36841400	Weak transcription	Small Intestine	intestine
13	chr6:36821600-36830200	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:36821800-36830600	Weak transcription	NHDF-Ad	bronchial
15	chr6:36821800-36839800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:36821800-36841400	Weak transcription	HSMMtube	muscle
17	chr6:36822800-36830400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:36823600-36832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:36823600-36841400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:36823800-36830000	Weak transcription	Gastric	stomach
21	chr6:36823800-36831600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:36823800-36833600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:36824000-36829800	Weak transcription	HMEC	breast
24	chr6:36824000-36830000	Weak transcription	Aorta	Aorta
25	chr6:36824000-36831000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:36824200-36830400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:36824200-36830400	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:36824200-36833800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:36824400-36830400	Weak transcription	Fetal Intestine Large	intestine
30	chr6:36824400-36830400	Weak transcription	A549	lung
31	chr6:36824400-36832400	Weak transcription	HSMM	muscle
32	chr6:36824400-36836600	Weak transcription	Adipose Nuclei	Adipose
33	chr6:36824600-36829800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:36824600-36829800	Weak transcription	Fetal Brain Female	brain
35	chr6:36824600-36830000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:36824600-36830000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:36824600-36830000	Weak transcription	Spleen	Spleen
38	chr6:36824600-36830200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr6:36824600-36830200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:36824600-36830400	Weak transcription	Placenta	Placenta
41	chr6:36824600-36830400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr6:36824600-36830600	Weak transcription	Brain Substantia Nigra	brain
43	chr6:36824600-36831600	Weak transcription	Esophagus	oesophagus
44	chr6:36824600-36834000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:36824600-36838600	Weak transcription	Psoas Muscle	Psoas
46	chr6:36824800-36830000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:36825000-36834000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr6:36825200-36830200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:36825200-36830400	Weak transcription	HUVEC	blood vessel
50	chr6:36825600-36830000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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