Variant report

Variant	rs16889199
Chromosome Location	chr6:36825095-36825096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36763716..36766678-chr6:36824320..36826178,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12662733	1.00[CHB][hapmap]
rs13193599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13193613	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.96[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889173	0.84[GIH][hapmap]
rs34031451	0.98[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34651740	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35168332	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35423793	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6915283	1.00[CHB][hapmap]
rs6919096	1.00[CHB][hapmap]
rs6938178	1.00[CHB][hapmap]
rs73732013	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462232	0.81[ASW][hapmap];1.00[CEU][hapmap];0.91[LWK][hapmap];0.89[MKK][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9462234	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9462235	0.88[EUR][1000 genomes]
rs9470422	1.00[CEU][hapmap];0.85[GIH][hapmap];0.86[LWK][hapmap];0.84[MKK][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9470449	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5262	chr6:36799329-36826210	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36817000-36826200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:36817000-36841400	Weak transcription	Colonic Mucosa	Colon
3	chr6:36817200-36830200	Weak transcription	Fetal Lung	lung
4	chr6:36817200-36833400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:36817200-36841200	Weak transcription	Fetal Brain Male	brain
6	chr6:36817200-36842000	Weak transcription	Stomach Mucosa	stomach
7	chr6:36819000-36830000	Weak transcription	Fetal Kidney	kidney
8	chr6:36819000-36840400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:36819400-36834000	Strong transcription	Dnd41	blood
10	chr6:36819400-36841800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:36819600-36833400	Strong transcription	Primary T cells from cord blood	blood
12	chr6:36819800-36839800	Strong transcription	Fetal Thymus	thymus
13	chr6:36820000-36825800	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr6:36820000-36826200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:36820200-36825200	Strong transcription	Primary B cells from peripheral blood	blood
16	chr6:36820200-36825800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr6:36820200-36827000	Strong transcription	Thymus	Thymus
18	chr6:36820400-36825600	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:36820400-36825600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:36820400-36825600	Strong transcription	Hela-S3	cervix
21	chr6:36820400-36827000	Strong transcription	Primary hematopoietic stem cells	blood
22	chr6:36820600-36826200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:36820600-36826800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:36820800-36825400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:36821000-36841400	Weak transcription	Small Intestine	intestine
26	chr6:36821600-36825400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:36821600-36826200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:36821600-36827000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:36821600-36827600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:36821600-36828600	Strong transcription	K562	blood
31	chr6:36821600-36830200	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:36821800-36825200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:36821800-36825800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:36821800-36830600	Weak transcription	NHDF-Ad	bronchial
35	chr6:36821800-36839800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:36821800-36841400	Weak transcription	HSMMtube	muscle
37	chr6:36822000-36828600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:36822200-36825200	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr6:36822400-36825200	Strong transcription	NH-A	brain
40	chr6:36822400-36826200	Weak transcription	Brain Anterior Caudate	brain
41	chr6:36822600-36826200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:36822800-36825200	Strong transcription	HUVEC	blood vessel
43	chr6:36822800-36830400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:36823000-36825600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:36823000-36825800	Strong transcription	Lung	lung
46	chr6:36823000-36826200	Strong transcription	HepG2	liver
47	chr6:36823000-36827000	Strong transcription	GM12878-XiMat	blood
48	chr6:36823200-36825200	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:36823600-36826200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:36823600-36827000	Strong transcription	Fetal Intestine Small	intestine

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