Variant report

Variant	rs6915283
Chromosome Location	chr6:36839851-36839852
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36839147..36840656-chr6:36842294..36843831,2	MCF-7	breast:
2	chr6:36839698..36842485-chr6:36952323..36954016,2	K562	blood:
3	chr6:36838369..36843263-chr6:36951921..36955568,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137168	Chromatin interaction
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1008215	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1062151	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660067	1.00[YRI][hapmap]
rs12662733	1.00[CHB][hapmap]
rs12664540	1.00[YRI][hapmap]
rs13193599	1.00[CHB][hapmap]
rs13193613	1.00[CHB][hapmap]
rs16889173	1.00[YRI][hapmap]
rs16889183	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs16889199	1.00[CHB][hapmap]
rs16889215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17314629	0.80[EUR][1000 genomes]
rs3857566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912772	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6919096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470449	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36817000-36841400	Weak transcription	Colonic Mucosa	Colon
2	chr6:36817200-36841200	Weak transcription	Fetal Brain Male	brain
3	chr6:36817200-36842000	Weak transcription	Stomach Mucosa	stomach
4	chr6:36819000-36840400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:36819400-36841800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:36821000-36841400	Weak transcription	Small Intestine	intestine
7	chr6:36821800-36841400	Weak transcription	HSMMtube	muscle
8	chr6:36823600-36841400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:36826400-36841200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:36826800-36840000	Strong transcription	Fetal Stomach	stomach
11	chr6:36826800-36841400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:36827000-36841400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:36827000-36841400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:36827000-36841400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:36827600-36840400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:36827800-36840600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:36828000-36841400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:36828200-36841600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:36828600-36841000	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:36828800-36841200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:36829000-36840400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:36830000-36840000	Strong transcription	Fetal Muscle Trunk	muscle
23	chr6:36830600-36840400	Weak transcription	Brain Anterior Caudate	brain
24	chr6:36830800-36841400	Weak transcription	NHDF-Ad	bronchial
25	chr6:36831200-36841400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:36831400-36841000	Weak transcription	NHLF	lung
27	chr6:36831800-36841400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:36831800-36841400	Weak transcription	Brain Substantia Nigra	brain
29	chr6:36831800-36841400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:36831800-36841400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr6:36832200-36842000	Weak transcription	Aorta	Aorta
32	chr6:36832600-36841600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:36833000-36841400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:36833200-36841200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:36833200-36841400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:36833400-36840600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:36833400-36841200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:36833400-36841400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:36833400-36841400	Weak transcription	Right Atrium	heart
40	chr6:36833800-36840200	Strong transcription	Fetal Lung	lung
41	chr6:36833800-36841800	Weak transcription	Esophagus	oesophagus
42	chr6:36834000-36840400	Genic enhancers	Dnd41	blood
43	chr6:36834000-36840600	Weak transcription	Brain Angular Gyrus	brain
44	chr6:36834200-36841400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:36834200-36841400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr6:36834400-36840400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr6:36834400-36840600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr6:36835000-36840400	Weak transcription	Right Ventricle	heart
49	chr6:36835000-36840600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:36835200-36841400	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links