Variant report

Variant	rs1062151
Chromosome Location	chr6:36893028-36893029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36890243..36895519-chr6:36897368..36902270,7	K562	blood:
2	chr6:36830142..36832721-chr6:36892785..36895215,2	K562	blood:
3	chr6:36856383..36858812-chr6:36892219..36894904,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1008215	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889215	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3213536	1.00[CEU][hapmap]
rs3857566	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912772	1.00[ASN][1000 genomes]
rs6915283	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919096	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938178	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1062151	PI16	cis	hippocampus	BrainEAC
rs1062151	PI16	cis	intralobular white matter	BrainEAC
rs1062151	PI16	cis	brain	BrainEAC
rs1062151	PI16	cis	inferior olivary nucleus	BrainEAC

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36866200-36896400	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:36867000-36897000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:36877800-36896000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:36879400-36894000	Strong transcription	Fetal Brain Female	brain
5	chr6:36879600-36894000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:36879600-36895400	Strong transcription	Brain Germinal Matrix	brain
7	chr6:36880200-36893800	Strong transcription	K562	blood
8	chr6:36880600-36893600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:36880600-36900000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:36881000-36894800	Weak transcription	Fetal Brain Male	brain
11	chr6:36881400-36893600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:36881400-36893800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:36881400-36896200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:36882000-36893800	Strong transcription	Liver	Liver
15	chr6:36882200-36894000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr6:36882400-36893600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:36882400-36893800	Strong transcription	Duodenum Mucosa	Duodenum
18	chr6:36882400-36894800	Strong transcription	Fetal Intestine Small	intestine
19	chr6:36882400-36895600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:36882400-36896800	Weak transcription	Hela-S3	cervix
21	chr6:36882600-36893800	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:36882600-36893800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:36882600-36893800	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:36882600-36894000	Strong transcription	Dnd41	blood
25	chr6:36882800-36893800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:36883000-36893600	Weak transcription	A549	lung
27	chr6:36883200-36893400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:36883600-36893800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:36884000-36895400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr6:36884400-36894200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:36884800-36901200	Weak transcription	HMEC	breast
32	chr6:36886800-36893800	Strong transcription	Fetal Stomach	stomach
33	chr6:36886800-36895400	Weak transcription	Psoas Muscle	Psoas
34	chr6:36887400-36894600	Weak transcription	Ovary	ovary
35	chr6:36887600-36895600	Weak transcription	Right Atrium	heart
36	chr6:36887800-36893800	Strong transcription	Lung	lung
37	chr6:36888000-36894200	Strong transcription	Left Ventricle	heart
38	chr6:36888000-36895400	Weak transcription	Colonic Mucosa	Colon
39	chr6:36888200-36893800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr6:36888400-36894200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:36888400-36895600	Weak transcription	Stomach Mucosa	stomach
42	chr6:36888600-36893800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:36889400-36895000	Weak transcription	Fetal Heart	heart
44	chr6:36889400-36897400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:36890000-36893800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:36890200-36893400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr6:36890200-36893600	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr6:36890400-36893200	Strong transcription	GM12878-XiMat	blood
49	chr6:36890400-36894000	Strong transcription	Adipose Nuclei	Adipose
50	chr6:36890400-36894000	Strong transcription	Skeletal Muscle Female	skeletal muscle

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