Variant report

Variant	rs16889215
Chromosome Location	chr6:36837441-36837442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36821139..36823269-chr6:36836420..36838808,2	K562	blood:
2	chr6:36818579..36822639-chr6:36835896..36837920,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1008215	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1062151	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17314629	0.80[EUR][1000 genomes]
rs3857566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912772	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6915283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919096	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36817000-36841400	Weak transcription	Colonic Mucosa	Colon
2	chr6:36817200-36841200	Weak transcription	Fetal Brain Male	brain
3	chr6:36817200-36842000	Weak transcription	Stomach Mucosa	stomach
4	chr6:36819000-36840400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:36819400-36841800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:36819800-36839800	Strong transcription	Fetal Thymus	thymus
7	chr6:36821000-36841400	Weak transcription	Small Intestine	intestine
8	chr6:36821800-36839800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:36821800-36841400	Weak transcription	HSMMtube	muscle
10	chr6:36823600-36841400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:36824600-36838600	Weak transcription	Psoas Muscle	Psoas
12	chr6:36826200-36839800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:36826400-36841200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:36826800-36840000	Strong transcription	Fetal Stomach	stomach
15	chr6:36826800-36841400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:36827000-36841400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:36827000-36841400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:36827000-36841400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:36827600-36839400	Strong transcription	HepG2	liver
20	chr6:36827600-36840400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:36827800-36840600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:36828000-36838200	Strong transcription	Hela-S3	cervix
23	chr6:36828000-36838800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr6:36828000-36841400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:36828200-36839800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr6:36828200-36841600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:36828600-36841000	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:36828800-36841200	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:36829000-36840400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:36830000-36838200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:36830000-36839400	Strong transcription	Thymus	Thymus
32	chr6:36830000-36839800	Strong transcription	H9 Cell Line	embryonic stem cell
33	chr6:36830000-36839800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:36830000-36840000	Strong transcription	Fetal Muscle Trunk	muscle
35	chr6:36830200-36839000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:36830200-36839400	Strong transcription	Primary B cells from peripheral blood	blood
37	chr6:36830400-36839600	Strong transcription	Fetal Intestine Large	intestine
38	chr6:36830600-36840400	Weak transcription	Brain Anterior Caudate	brain
39	chr6:36830800-36837600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:36830800-36841400	Weak transcription	NHDF-Ad	bronchial
41	chr6:36831000-36839800	Strong transcription	NHEK	skin
42	chr6:36831200-36838000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:36831200-36841400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:36831400-36841000	Weak transcription	NHLF	lung
45	chr6:36831600-36838800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:36831800-36841400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:36831800-36841400	Weak transcription	Brain Substantia Nigra	brain
48	chr6:36831800-36841400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr6:36831800-36841400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:36832000-36837600	Weak transcription	Liver	Liver

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