Variant report

Variant	rs73418121
Chromosome Location	chr6:36815376-36815377
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36794469..36796279-chr6:36812712..36815459,2	K562	blood:
2	chr6:36813097..36817689-chr6:36839602..36844147,5	K562	blood:
3	chr6:36811002..36813494-chr6:36814165..36817730,3	MCF-7	breast:
4	chr6:36759502..36762298-chr6:36813036..36815404,2	K562	blood:
5	chr6:36562562..36564924-chr6:36814453..36817314,2	K562	blood:
6	chr6:36813865..36816350-chr6:36831704..36833513,2	MCF-7	breast:
7	chr6:36815094..36818441-chr6:36826786..36830432,3	K562	blood:
8	chr6:36808554..36811671-chr6:36814361..36817752,3	MCF-7	breast:
9	chr6:36815130..36818530-chr6:36818954..36823604,5	K562	blood:
10	chr6:36802135..36806247-chr6:36814930..36817365,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198663	Chromatin interaction
ENSG00000137168	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1008027	0.96[ASN][1000 genomes]
rs10456446	0.84[ASN][1000 genomes]
rs13190998	0.84[ASN][1000 genomes]
rs13219894	0.84[ASN][1000 genomes]
rs13219913	0.85[ASN][1000 genomes]
rs13220210	0.85[ASN][1000 genomes]
rs16889252	0.84[ASN][1000 genomes]
rs34031451	0.84[ASN][1000 genomes]
rs34651740	0.84[ASN][1000 genomes]
rs35168332	0.83[ASN][1000 genomes]
rs35423793	0.83[ASN][1000 genomes]
rs3798469	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3957238	0.84[ASN][1000 genomes]
rs4714023	0.84[ASN][1000 genomes]
rs61006307	0.85[ASN][1000 genomes]
rs6457961	0.81[ASN][1000 genomes]
rs6457962	0.87[AFR][1000 genomes]
rs67540019	0.83[ASN][1000 genomes]
rs6930737	0.86[ASN][1000 genomes]
rs729659	0.84[ASN][1000 genomes]
rs73418143	0.85[ASN][1000 genomes]
rs9296200	0.82[ASN][1000 genomes]
rs9462232	0.84[ASN][1000 genomes]
rs9462234	0.81[ASN][1000 genomes]
rs9462235	0.81[ASN][1000 genomes]
rs9462236	0.84[ASN][1000 genomes]
rs9462238	0.82[ASN][1000 genomes]
rs9470422	0.83[ASN][1000 genomes]
rs9470429	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5262	chr6:36799329-36826210	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36808600-36818800	Weak transcription	Dnd41	blood
2	chr6:36808800-36816000	Weak transcription	Spleen	Spleen
3	chr6:36808800-36816600	Weak transcription	Aorta	Aorta
4	chr6:36809000-36816600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:36809000-36818600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:36809000-36820200	Weak transcription	Thymus	Thymus
7	chr6:36809000-36823000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:36809200-36816000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:36809200-36817000	Weak transcription	Brain Anterior Caudate	brain
10	chr6:36809200-36818000	Weak transcription	HSMM	muscle
11	chr6:36809200-36819200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:36809800-36818400	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:36811000-36815400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:36811000-36816000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:36811000-36816000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:36811400-36823200	Weak transcription	Esophagus	oesophagus
17	chr6:36811600-36816200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:36812600-36816400	Weak transcription	Brain Germinal Matrix	brain
19	chr6:36812800-36816000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:36813200-36816400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:36813200-36821200	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:36813200-36823200	Weak transcription	Brain Substantia Nigra	brain
23	chr6:36813400-36815400	Weak transcription	Left Ventricle	heart
24	chr6:36813400-36815600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:36813800-36815400	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:36813800-36815400	Weak transcription	Right Atrium	heart
27	chr6:36813800-36815600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:36814000-36815400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:36814000-36815400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:36814000-36815400	Weak transcription	Right Ventricle	heart
31	chr6:36814000-36816200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:36814200-36817600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:36814800-36816200	Enhancers	K562	blood
34	chr6:36815000-36815400	Enhancers	Fetal Heart	heart
35	chr6:36815000-36816400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:36815000-36816600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:36815200-36819200	Weak transcription	Stomach Smooth Muscle	stomach

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