Variant report

Variant	rs9470512
Chromosome Location	chr6:37143852-37143853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36986704..36989581-chr6:37141557..37144395,2	K562	blood:
2	chr6:37142590..37145563-chr6:37170274..37176000,5	K562	blood:
3	chr6:37143067..37148225-chr6:37171800..37179920,10	K562	blood:
4	chr6:36993861..36996746-chr6:37142194..37145787,3	K562	blood:

Variant related genes	Relation type
ENSG00000146192	Chromatin interaction

rs_ID	r²[population]
rs262937	1.00[AMR][1000 genomes]
rs6919051	1.00[AMR][1000 genomes]
rs6940883	1.00[AMR][1000 genomes]
rs73414002	1.00[AMR][1000 genomes]
rs7744585	1.00[AMR][1000 genomes]
rs9462274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462275	1.00[AMR][1000 genomes]
rs9462276	1.00[AMR][1000 genomes]
rs9462286	1.00[AMR][1000 genomes]
rs9470503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470504	1.00[AMR][1000 genomes]
rs9470506	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470509	0.86[AFR][1000 genomes]
rs9470510	1.00[AMR][1000 genomes]
rs9470511	1.00[AMR][1000 genomes]
rs9470525	1.00[AMR][1000 genomes]
rs9470526	1.00[AMR][1000 genomes]
rs9470538	1.00[AMR][1000 genomes]
rs9470539	1.00[AMR][1000 genomes]

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37138200-37144000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr6:37138600-37144400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
3	chr6:37138800-37144000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:37138800-37145000	Transcr. at gene 5' and 3'	K562	blood
5	chr6:37140000-37144000	Weak transcription	HSMM	muscle
6	chr6:37141000-37144600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:37141000-37165000	Weak transcription	Right Atrium	heart
8	chr6:37141400-37144000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:37141400-37144000	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:37141600-37145200	Weak transcription	Fetal Brain Male	brain
11	chr6:37141800-37144000	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:37142000-37144400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:37142200-37144600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:37142400-37144000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:37142600-37144600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:37142600-37144600	Strong transcription	Fetal Intestine Small	intestine
17	chr6:37142600-37144600	Weak transcription	Pancreas	Pancrea
18	chr6:37142600-37145000	Weak transcription	Fetal Kidney	kidney
19	chr6:37142600-37145200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:37142600-37145200	Weak transcription	Brain Angular Gyrus	brain
21	chr6:37142600-37145200	Weak transcription	Brain Anterior Caudate	brain
22	chr6:37142600-37145400	Weak transcription	Hela-S3	cervix
23	chr6:37142600-37159600	Weak transcription	Fetal Heart	heart
24	chr6:37142800-37144000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
25	chr6:37142800-37144600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:37142800-37145000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:37142800-37145000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:37142800-37145000	Weak transcription	HSMMtube	muscle
29	chr6:37143000-37144000	Genic enhancers	Fetal Thymus	thymus
30	chr6:37143000-37144200	Strong transcription	Fetal Stomach	stomach
31	chr6:37143000-37144400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:37143000-37144400	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:37143000-37144600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:37143000-37144600	Weak transcription	Aorta	Aorta
35	chr6:37143000-37144600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr6:37143000-37144600	Weak transcription	Fetal Brain Female	brain
37	chr6:37143000-37144600	Weak transcription	Psoas Muscle	Psoas
38	chr6:37143000-37145200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:37143000-37147800	Weak transcription	Colonic Mucosa	Colon
40	chr6:37143200-37144400	Weak transcription	Spleen	Spleen
41	chr6:37143200-37144800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr6:37143200-37144800	Weak transcription	Brain Substantia Nigra	brain
43	chr6:37143200-37144800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr6:37143200-37145200	Weak transcription	Brain Germinal Matrix	brain
45	chr6:37143200-37145200	Weak transcription	Small Intestine	intestine
46	chr6:37143200-37146000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:37143200-37146800	Enhancers	Primary hematopoietic stem cells	blood
48	chr6:37143200-37147000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:37143200-37148000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr6:37143200-37150600	Weak transcription	Gastric	stomach

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