Variant report

Variant	rs6940883
Chromosome Location	chr6:36993145-36993146
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36991470..36994009-chr6:36994154..36996007,2	K562	blood:
2	chr6:36990515..36993191-chr6:37140306..37142032,2	K562	blood:
3	chr6:36990051..36995346-chr6:37136390..37139647,6	K562	blood:
4	chr6:36989418..36991271-chr6:36992892..36995334,2	K562	blood:
5	chr6:36993138..36995327-chr6:37018553..37020815,2	MCF-7	breast:
6	chr6:36987000..36988996-chr6:36992167..36994325,2	MCF-7	breast:
7	chr6:36989691..36991271-chr6:36992892..36995062,3	K562	blood:
8	chr6:36993041..37002133-chr6:37135266..37141596,21	K562	blood:
9	chr6:36990312..36994052-chr6:36999183..37001742,4	MCF-7	breast:
10	chr6:36990146..36994003-chr6:37137207..37141161,5	MCF-7	breast:
11	chr6:36990308..36994435-chr6:37135955..37142463,7	MCF-7	breast:
12	chr6:36954227..36956971-chr6:36992385..36994779,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs262937	1.00[AMR][1000 genomes]
rs6919051	1.00[AMR][1000 genomes]
rs6929632	1.00[EUR][1000 genomes]
rs6934364	1.00[EUR][1000 genomes]
rs73414002	1.00[AMR][1000 genomes]
rs73730528	1.00[EUR][1000 genomes]
rs73730531	1.00[EUR][1000 genomes]
rs7744585	1.00[AMR][1000 genomes]
rs9462261	1.00[EUR][1000 genomes]
rs9462274	1.00[AMR][1000 genomes]
rs9462275	1.00[AMR][1000 genomes]
rs9462276	1.00[AMR][1000 genomes]
rs9462286	1.00[AMR][1000 genomes]
rs9470503	1.00[AMR][1000 genomes]
rs9470504	1.00[AMR][1000 genomes]
rs9470506	1.00[AMR][1000 genomes]
rs9470508	1.00[AMR][1000 genomes]
rs9470510	1.00[AMR][1000 genomes]
rs9470511	1.00[AMR][1000 genomes]
rs9470512	1.00[AMR][1000 genomes]
rs9470525	1.00[AMR][1000 genomes]
rs9470526	1.00[AMR][1000 genomes]
rs9470538	1.00[AMR][1000 genomes]
rs9470539	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv885816	chr6:36965099-36999682	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36983400-36995000	Weak transcription	Lung	lung
2	chr6:36986800-37006600	Weak transcription	Colonic Mucosa	Colon
3	chr6:36987000-36993200	Weak transcription	Placenta	Placenta
4	chr6:36987000-36996800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr6:36987000-36996800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:36987200-36993800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:36987200-36995000	Strong transcription	Primary B cells from cord blood	blood
8	chr6:36987200-36997200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:36988200-36998000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr6:36988600-37006600	Weak transcription	Fetal Intestine Small	intestine
11	chr6:36989200-36993400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:36989400-36994200	Enhancers	HMEC	breast
13	chr6:36989600-36993600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:36990000-36993400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:36990000-36993800	Weak transcription	K562	blood
16	chr6:36990000-36997000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:36990200-36994200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:36990200-36996400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:36990200-36998200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:36990200-37006600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:36990400-36993800	Weak transcription	Fetal Thymus	thymus
22	chr6:36990400-36997000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:36990600-36993200	Enhancers	NHEK	skin
24	chr6:36990800-36994200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:36991000-37001600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:36991200-36997000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:36991200-36997000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr6:36991400-36995000	Weak transcription	Stomach Mucosa	stomach
29	chr6:36991400-36996800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:36991600-36996600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr6:36991600-36996800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:36991600-36997000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:36991600-36998400	Weak transcription	Adipose Nuclei	Adipose
34	chr6:36991800-36998000	Weak transcription	GM12878-XiMat	blood
35	chr6:36992200-36994200	Enhancers	Primary T cells fromperipheralblood	blood
36	chr6:36992200-36995400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:36992400-36993400	Bivalent Enhancer	HepG2	liver
38	chr6:36992400-36993600	Enhancers	A549	lung
39	chr6:36992400-36996000	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr6:36992400-36997000	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:36992600-36993200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:36992600-36993800	Enhancers	Pancreas	Pancrea
43	chr6:36992600-36993800	Enhancers	Placenta Amnion	Placenta Amnion
44	chr6:36992600-36993800	Strong transcription	Spleen	Spleen
45	chr6:36992600-36994200	Enhancers	Esophagus	oesophagus
46	chr6:36992600-36994400	Enhancers	Dnd41	blood
47	chr6:36992600-36995400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:36992600-37005800	Weak transcription	Liver	Liver
49	chr6:36992800-36994000	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr6:36992800-36994000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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