Variant report

Variant	rs9472241
Chromosome Location	chr6:44259229-44259230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44257453..44260183-chr6:44326040..44328035,2	MCF-7	breast:
2	chr6:44258945..44261017-chr6:44295322..44296917,2	MCF-7	breast:
3	chr6:44258148..44259912-chr6:44267548..44270485,2	MCF-7	breast:
4	chr6:44257360..44259617-chr6:44265641..44268497,2	MCF-7	breast:
5	chr6:44254194..44256325-chr6:44258837..44260906,2	MCF-7	breast:
6	chr6:44213492..44217926-chr6:44255634..44259894,8	K562	blood:
7	chr6:44214807..44216928-chr6:44256853..44259392,2	K562	blood:

Variant related genes	Relation type
ENSG00000096384	Chromatin interaction
ENSG00000124608	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12193699	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs161706	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs324136	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs324141	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs324143	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs325005	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs325006	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs325007	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs325008	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs325009	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs325010	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs325011	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35260018	0.96[EUR][1000 genomes]
rs4308546	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4714775	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs482336	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs484757	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs505617	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs511088	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs534416	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs541668	0.84[AMR][1000 genomes]
rs567192	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs568902	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61462867	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs650075	1.00[EUR][1000 genomes]
rs7740535	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs865027	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9357439	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9472243	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472244	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv462936	chr6:44191920-44282316	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv603004	chr6:44191920-44282316	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
4	nsv885853	chr6:44197181-44274797	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv885854	chr6:44211867-44274797	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
6	nsv462937	chr6:44211867-44279111	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
7	nsv603005	chr6:44211867-44279111	Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44244400-44264800	Weak transcription	Right Atrium	heart
2	chr6:44257800-44260400	Enhancers	Fetal Brain Female	brain
3	chr6:44258600-44260000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:44258800-44260200	Weak transcription	Fetal Brain Male	brain
5	chr6:44259200-44259600	Bivalent Enhancer	Fetal Muscle Leg	muscle

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