Variant report
Variant | rs61462867 |
---|---|
Chromosome Location | chr6:44262440-44262441 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000157593 | Chromatin interaction |
ENSG00000096384 | Chromatin interaction |
ENSG00000124608 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11571907 | 1.00[ASN][1000 genomes] |
rs11571915 | 1.00[ASN][1000 genomes] |
rs11571917 | 1.00[ASN][1000 genomes] |
rs11571951 | 1.00[ASN][1000 genomes] |
rs11571957 | 1.00[ASN][1000 genomes] |
rs11571998 | 1.00[ASN][1000 genomes] |
rs11572002 | 1.00[ASN][1000 genomes] |
rs11572056 | 1.00[ASN][1000 genomes] |
rs12193699 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1293204 | 1.00[ASN][1000 genomes] |
rs1331293 | 1.00[ASN][1000 genomes] |
rs1411905 | 1.00[ASN][1000 genomes] |
rs161706 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs324136 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs324141 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs324143 | 1.00[EUR][1000 genomes] |
rs325005 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs325006 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs325007 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs325008 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs325009 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs325010 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs325011 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35260018 | 0.96[EUR][1000 genomes] |
rs4308546 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4499913 | 0.88[AFR][1000 genomes] |
rs4714775 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs4714778 | 1.00[ASN][1000 genomes] |
rs482336 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs484757 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs505617 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs511088 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs534416 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs567192 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs568902 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs650075 | 0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6927345 | 1.00[ASN][1000 genomes] |
rs7740535 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs865027 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9357439 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes] |
rs9369483 | 1.00[ASN][1000 genomes] |
rs9472241 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9472243 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9472244 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv931987 | chr6:43624625-44350167 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 201 gene(s) | inside rSNPs | diseases |
2 | nsv462936 | chr6:44191920-44282316 | Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 101 gene(s) | inside rSNPs | diseases |
3 | nsv603004 | chr6:44191920-44282316 | Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 101 gene(s) | inside rSNPs | diseases |
4 | nsv885853 | chr6:44197181-44274797 | Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 94 gene(s) | inside rSNPs | diseases |
5 | nsv885854 | chr6:44211867-44274797 | Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionmiRNAmiRNA target site | 94 gene(s) | inside rSNPs | diseases |
6 | nsv462937 | chr6:44211867-44279111 | Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionmiRNAmiRNA target site | 95 gene(s) | inside rSNPs | diseases |
7 | nsv603005 | chr6:44211867-44279111 | Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionmiRNAmiRNA target site | 95 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:44244400-44264800 | Weak transcription | Right Atrium | heart |
2 | chr6:44260000-44262600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |