The 2.0 version of rSNPBase

Variant report

Variant rs11571907
Chromosome Location chr6:44357471-44357472
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:44356000-44357800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
2 chr6:44356000-44358400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr6:44356200-44357600 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
4 chr6:44356200-44357600 Enhancers Gastric stomach
5 chr6:44356200-44357600 Flanking Active TSS Hela-S3 cervix
6 chr6:44356200-44357800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr6:44356200-44357800 Enhancers Spleen Spleen
8 chr6:44356200-44359200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr6:44356400-44357600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
10 chr6:44356400-44357600 Enhancers Primary mononuclear cells fromperipheralblood Blood
11 chr6:44356400-44357600 Flanking Active TSS Brain Germinal Matrix brain
12 chr6:44356400-44357600 Flanking Active TSS Colon Smooth Muscle Colon
13 chr6:44356400-44357600 Enhancers Sigmoid Colon Sigmoid Colon
14 chr6:44356400-44357800 Enhancers Primary B cells from peripheral blood blood
15 chr6:44356400-44357800 Enhancers Placenta Amnion Placenta Amnion
16 chr6:44356400-44358400 Enhancers Aorta Aorta
17 chr6:44356400-44358800 Weak transcription Lung lung
18 chr6:44356400-44359200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr6:44356400-44359400 Weak transcription H9 Cell Line embryonic stem cell
20 chr6:44356400-44361800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr6:44356400-44364800 Weak transcription ES-WA7 Cell Line embryonic stem cell
22 chr6:44356400-44393800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
23 chr6:44356600-44357600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr6:44356600-44357600 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
25 chr6:44356600-44357600 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
26 chr6:44356600-44357600 Transcr. at gene 5' and 3' K562 blood
27 chr6:44356600-44357800 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr6:44356600-44357800 Weak transcription Fetal Muscle Trunk muscle
29 chr6:44356600-44358000 Enhancers Primary monocytes fromperipheralblood blood
30 chr6:44356600-44358000 Enhancers Primary T regulatory cells fromperipheralblood blood
31 chr6:44356600-44358000 Enhancers Fetal Heart heart
32 chr6:44356600-44358200 Enhancers Primary neutrophils fromperipheralblood blood
33 chr6:44356600-44358400 Enhancers Primary T killer memory cells from peripheral blood blood
34 chr6:44356600-44358400 Enhancers Small Intestine intestine
35 chr6:44356600-44358800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr6:44356800-44357600 Enhancers Fetal Adrenal Gland Adrenal Gland
37 chr6:44356800-44357600 Flanking Active TSS HepG2 liver
38 chr6:44356800-44358200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
39 chr6:44356800-44358400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr6:44356800-44358400 Enhancers Primary T killer naive cells fromperipheralblood blood
41 chr6:44356800-44358400 Flanking Active TSS Fetal Brain Female brain
42 chr6:44357000-44357600 Enhancers Primary T cells fromperipheralblood blood
43 chr6:44357000-44357600 Enhancers Adipose Nuclei Adipose
44 chr6:44357000-44357600 Enhancers Right Ventricle heart
45 chr6:44357000-44357600 Enhancers HUVEC blood vessel
46 chr6:44357000-44357800 Enhancers NHLF lung
47 chr6:44357000-44358000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
48 chr6:44357000-44358000 Weak transcription HUES6 Cell Line embryonic stem cell
49 chr6:44357000-44358000 Weak transcription iPS-20b Cell Line embryonic stem cell
50 chr6:44357000-44358000 Enhancers Primary T cells from cord blood blood

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Last update: Aug 31, 2015