Variant report
| Variant | rs4714778 |
|---|---|
| Chromosome Location | chr6:44289145-44289146 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:44273300..44278087-chr6:44284295..44289273,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11571907 | 1.00[ASN][1000 genomes] |
| rs11571915 | 1.00[ASN][1000 genomes] |
| rs11571917 | 1.00[ASN][1000 genomes] |
| rs11571951 | 1.00[ASN][1000 genomes] |
| rs11571957 | 1.00[ASN][1000 genomes] |
| rs11571998 | 1.00[ASN][1000 genomes] |
| rs11572002 | 1.00[ASN][1000 genomes] |
| rs11572056 | 1.00[ASN][1000 genomes] |
| rs12193699 | 1.00[ASN][1000 genomes] |
| rs1293204 | 1.00[ASN][1000 genomes] |
| rs1331293 | 1.00[ASN][1000 genomes] |
| rs1411905 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs161706 | 1.00[ASN][1000 genomes] |
| rs324136 | 1.00[ASN][1000 genomes] |
| rs325005 | 1.00[ASN][1000 genomes] |
| rs325006 | 1.00[ASN][1000 genomes] |
| rs325007 | 1.00[ASN][1000 genomes] |
| rs325008 | 1.00[ASN][1000 genomes] |
| rs325009 | 1.00[ASN][1000 genomes] |
| rs4308546 | 1.00[ASN][1000 genomes] |
| rs482336 | 1.00[ASN][1000 genomes] |
| rs534416 | 1.00[ASN][1000 genomes] |
| rs567192 | 1.00[ASN][1000 genomes] |
| rs61462867 | 1.00[ASN][1000 genomes] |
| rs650075 | 1.00[ASN][1000 genomes] |
| rs6927345 | 1.00[ASN][1000 genomes] |
| rs7740535 | 1.00[ASN][1000 genomes] |
| rs9369483 | 1.00[ASN][1000 genomes] |
| rs9472243 | 1.00[ASN][1000 genomes] |
| rs9472244 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931987 | chr6:43624625-44350167 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 201 gene(s) | inside rSNPs | diseases |
| 2 | nsv516456 | chr6:44282316-44298309 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:44288000-44289800 | Enhancers | Primary neutrophils fromperipheralblood | blood |
