Variant report

Variant	rs6927345
Chromosome Location	chr6:44400629-44400630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11571907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11571915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11571917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11571951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11571957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11571998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572056	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193699	1.00[ASN][1000 genomes]
rs1293204	1.00[ASN][1000 genomes]
rs1331293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411905	1.00[ASN][1000 genomes]
rs161706	1.00[ASN][1000 genomes]
rs324136	1.00[ASN][1000 genomes]
rs325005	1.00[ASN][1000 genomes]
rs325006	1.00[ASN][1000 genomes]
rs325007	1.00[ASN][1000 genomes]
rs325008	1.00[ASN][1000 genomes]
rs325009	1.00[ASN][1000 genomes]
rs4308546	1.00[ASN][1000 genomes]
rs4714778	1.00[ASN][1000 genomes]
rs482336	1.00[ASN][1000 genomes]
rs534416	1.00[ASN][1000 genomes]
rs567192	1.00[ASN][1000 genomes]
rs61462867	1.00[ASN][1000 genomes]
rs650075	1.00[ASN][1000 genomes]
rs7740535	1.00[ASN][1000 genomes]
rs9369483	1.00[ASN][1000 genomes]
rs9472243	1.00[ASN][1000 genomes]
rs9472244	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv885858	chr6:44385441-44421240	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv885859	chr6:44385441-44422466	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv517370	chr6:44385441-44422689	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv1850024	chr6:44388505-44422689	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44358400-44403800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:44376800-44424400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:44385200-44403200	Weak transcription	Gastric	stomach
4	chr6:44386600-44409200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:44386800-44402600	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:44386800-44402600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:44386800-44402800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:44386800-44404200	Strong transcription	Fetal Thymus	thymus
9	chr6:44386800-44405000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:44386800-44406400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:44386800-44408800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr6:44387000-44401600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:44387000-44401600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:44387000-44402400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:44387000-44402600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr6:44387000-44402600	Strong transcription	Placenta	Placenta
17	chr6:44387000-44402800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:44387000-44403400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:44387000-44403600	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:44387000-44405000	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr6:44387000-44405400	Strong transcription	Primary hematopoietic stem cells	blood
22	chr6:44387000-44408000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr6:44387200-44402800	Strong transcription	Primary B cells from cord blood	blood
24	chr6:44387400-44403800	Strong transcription	Dnd41	blood
25	chr6:44387600-44408600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:44388400-44424400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:44388800-44403200	Weak transcription	Pancreas	Pancrea
28	chr6:44388800-44409800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:44390000-44404600	Weak transcription	Stomach Mucosa	stomach
30	chr6:44390200-44401800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:44390200-44402200	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:44390200-44409600	Weak transcription	Spleen	Spleen
33	chr6:44390200-44420200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:44390400-44403400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:44391800-44409800	Weak transcription	Aorta	Aorta
36	chr6:44391800-44412600	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:44392800-44403200	Weak transcription	Psoas Muscle	Psoas
38	chr6:44392800-44407000	Weak transcription	Ovary	ovary
39	chr6:44392800-44411800	Weak transcription	Esophagus	oesophagus
40	chr6:44393400-44401600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr6:44393600-44401600	Weak transcription	NH-A	brain
42	chr6:44393600-44411600	Weak transcription	Right Ventricle	heart
43	chr6:44394600-44407800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr6:44394800-44410000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:44395200-44407000	Weak transcription	NHEK	skin
46	chr6:44395200-44407200	Weak transcription	HMEC	breast
47	chr6:44395400-44408800	Weak transcription	HUVEC	blood vessel
48	chr6:44396200-44401000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr6:44396600-44407000	Weak transcription	Osteobl	bone
50	chr6:44396600-44432800	Weak transcription	Fetal Kidney	kidney

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