Variant report

Variant	rs9472477
Chromosome Location	chr6:45349509-45349510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13437231	0.93[EUR][1000 genomes]
rs16873215	0.82[CEU][hapmap]
rs6901579	0.82[CEU][hapmap]
rs73441910	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7762957	0.82[CEU][hapmap]
rs9463087	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9472482	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs9472489	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv527552	chr6:45347644-45349509	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45346400-45351400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:45346600-45350200	Weak transcription	Right Atrium	heart
3	chr6:45346800-45349800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:45347000-45349800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:45347000-45355000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:45347200-45354200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:45347400-45350600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:45349400-45351200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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